View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_low_32 (Length: 255)

Name: NF18958_low_32
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_low_32
NF18958_low_32
[»] chr5 (9 HSPs)
chr5 (1-234)||(29508161-29508394)
chr5 (1-37)||(29507657-29507693)
chr5 (1-37)||(29507729-29507765)
chr5 (2-37)||(29507874-29507909)
chr5 (2-37)||(29507946-29507981)
chr5 (2-37)||(29508090-29508125)
chr5 (1-37)||(29507585-29507621)
chr5 (1-37)||(29507801-29507837)
chr5 (1-37)||(29508017-29508053)
[»] scaffold0017 (2 HSPs)
scaffold0017 (43-232)||(173573-173762)
scaffold0017 (43-213)||(168583-168753)
[»] chr3 (4 HSPs)
chr3 (85-234)||(26727244-26727393)
chr3 (93-232)||(8341647-8341786)
chr3 (1-37)||(8333058-8333094)
chr3 (1-37)||(8341971-8342007)
[»] scaffold0061 (1 HSPs)
scaffold0061 (43-213)||(30039-30209)
[»] chr1 (5 HSPs)
chr1 (87-233)||(44611464-44611610)
chr1 (83-220)||(35898769-35898906)
chr1 (117-232)||(44786005-44786120)
chr1 (84-234)||(11544971-11545121)
chr1 (148-232)||(44144623-44144707)
[»] chr2 (4 HSPs)
chr2 (84-220)||(29228813-29228941)
chr2 (84-220)||(29342112-29342240)
chr2 (3-37)||(29228597-29228631)
chr2 (3-37)||(29341896-29341930)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 29508161 - 29508394
Alignment:
Q  1 tgagatgaaggtgttgcaattgtgagagatttccaagctgaattattgaaggactaatttcaccactcaaatggcatgtaaatgaaccatgcagatcaag 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  29508161 tgagatcaaggtgttgcaattgtgagagatttccaagctgaattattgaaggactaatttcaccactcaaattgcatgtaaacgaaccatgcagatcaag 29508260  T
Q  101 tctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29508261 tctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactca 29508360  T
Q  201 tcttgaaggccttctttgaatttgaggagtgcat 234  Q
    ||||||||||||||||||||||||||||||||||    
T  29508361 tcttgaaggccttctttgaatttgaggagtgcat 29508394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29507657 - 29507693
Alignment:
Q  1 tgagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  29507657 tgagatcaaggtgttgcaattgtgagagatttccaag 29507693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29507729 - 29507765
Alignment:
Q  1 tgagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  29507729 tgagatcaaggtgttgcaattgtgagagatttccaag 29507765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 29507874 - 29507909
Alignment:
Q  2 gagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29507874 gagatcaaggtgttgcaattgtgagagatttccaag 29507909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 29507946 - 29507981
Alignment:
Q  2 gagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29507946 gagatcaaggtgttgcaattgtgagagatttccaag 29507981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 29508090 - 29508125
Alignment:
Q  2 gagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29508090 gagatcaaggtgttgcaattgtgagagatttccaag 29508125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29507585 - 29507621
Alignment:
Q  1 tgagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  29507585 tgagatcaaggtgttgtaattgtgagagatttccaag 29507621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29507801 - 29507837
Alignment:
Q  1 tgagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  29507801 tgagatcaagatgttgcaattgtgagagatttccaag 29507837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29508017 - 29508053
Alignment:
Q  1 tgagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  29508017 tgagatcaagatgttgcaattgtgagagatttccaag 29508053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 173762 - 173573
Alignment:
Q  43 ttattgaaggactaatttcaccactcaaatggcatgtaaatgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactccctt 142  Q
    ||||||||||| | ||||||||||||||||| | |||    || |||||||||||||| |||||||||||||| ||||   |||||||| ||||||||||    
T  173762 ttattgaaggattgatttcaccactcaaatgacgtgtttccgagccatgcagatcaagactttgaacataaccagtttcgatgttgcattgaactccctt 173663  T
Q  143 ccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctttgaatttgaggagtgc 232  Q
    |||||||||||||||||||||| |  || ||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||    
T  173662 ccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgccataatcatcttgaaggccttgtttgaacgtgaggagtgc 173573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 168753 - 168583
Alignment:
Q  43 ttattgaaggactaatttcaccactcaaatggcatgtaaatgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactccctt 142  Q
    ||||||||||| | |||||||||||||||   | |||    |||||||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||    
T  168753 ttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccggtttgattgttgcattgaactccctt 168654  T
Q  143 ccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggcctt 213  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||| ||||| ||||||||||||||||    
T  168653 ccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggcctt 168583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 26727393 - 26727244
Alignment:
Q  85 aaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtgga 184  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||   |||||| ||||||||||||||||| ||||| | || ||||||||||||||    
T  26727393 aaccatgcaaatcaagtctttgaacataacctgtttcgttgttgcataagactcccatccatttgcagcaatctgcattttgatcatccttccatgtgga 26727294  T
Q  185 caacatgccatactcatcttgaaggccttctttgaatttgaggagtgcat 234  Q
    ||| ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  26727293 caaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtgcat 26727244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 232
Target Start/End: Complemental strand, 8341786 - 8341647
Alignment:
Q  93 agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgc 192  Q
    ||||||||  ||| ||||||||| ||||||||||||||| ||| ||| |||||||||||||||||| || ||||  |||||||||||| |||||||||||    
T  8341786 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcggacaacatgc 8341687  T
Q  193 catactcatcttgaaggccttctttgaatttgaggagtgc 232  Q
    |||| |||||| ||| ||||| ||||||  ||||||||||    
T  8341686 cataatcatctcgaacgccttgtttgaacgtgaggagtgc 8341647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8333094 - 8333058
Alignment:
Q  1 tgagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||||| |||||||||||||||||||||||| |||||    
T  8333094 tgagattaaggtgttgcaattgtgagagattcccaag 8333058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8342007 - 8341971
Alignment:
Q  1 tgagatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||||| |||||||||||||||||||||||| |||||    
T  8342007 tgagattaaggtgttgcaattgtgagagattcccaag 8341971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 30039 - 30209
Alignment:
Q  43 ttattgaaggactaatttcaccactcaaatggcatgtaaatgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactccctt 142  Q
    ||||||||||| | |||||||||||||||   | |||    |||||||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||    
T  30039 ttattgaaggattgatttcaccactcaaacaacgtgtttccgaaccatgcagatcaagcttttcaacataaccggtttgattgttgcattgaactccctt 30138  T
Q  143 ccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggcctt 213  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||| ||||| ||||||||||||||||    
T  30139 ccatttgcagcaatctgcatttggatcctccttccatgtggacaacataccatagtcatcttgaaggcctt 30209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 44611610 - 44611464
Alignment:
Q  87 ccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggaca 186  Q
    |||||||||||||| |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| ||   | ||||||||||||||||    
T  44611610 ccatgcagatcaagactttgaacataaccagtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggaca 44611511  T
Q  187 acatgccatactcatcttgaaggccttctttgaatttgaggagtgca 233  Q
    |||| |||||||||||||||||| ||| ||| ||  |||||||||||    
T  44611510 acataccatactcatcttgaaggtcttgtttaaacgtgaggagtgca 44611464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 35898906 - 35898769
Alignment:
Q  83 tgaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtg 182  Q
    ||||||||||| |||||| ||||||| |||||| ||||| ||||||||| ||||||| |||||||||||||||||| |||||||    || ||||||||     
T  35898906 tgaaccatgcaaatcaagactttgaatataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcatttggactatcattccatgta 35898807  T
Q  183 gacaacatgccatactcatcttgaaggccttctttgaa 220  Q
    |||||||| || ||||| ||||||||||||| ||||||    
T  35898806 gacaacataccgtactcgtcttgaaggccttgtttgaa 35898769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 44786005 - 44786120
Alignment:
Q  117 gtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctt 216  Q
    ||||| ||||||||| ||||||| | ||||||||| |||||| |||||||  |||| ||| ||||||||||||||||||| |||||||||| ||||| ||    
T  44786005 gtttggttgttgcattgaactccttcccatttgcaacaatctgcatttggaccgtctttcgatgtggacaacatgccataatcatcttgaatgccttgtt 44786104  T
Q  217 tgaatttgaggagtgc 232  Q
    ||||| ||||||||||    
T  44786105 tgaatgtgaggagtgc 44786120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 11544971 - 11545121
Alignment:
Q  84 gaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtgg 183  Q
    |||||||||| ||| || |||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||   ||| | | ||  |||||||| |    
T  11544971 gaaccatgcaaatcgagactttgaacataacctgtttggttgttgcaacgaactcctttccatttacaacaatctgggttttgattgttgttccatgtcg 11545070  T
Q  184 acaacatgccatactcatcttgaaggccttctttgaatttgaggagtgcat 234  Q
    |||||||| |||||| ||||| ||||  || ||||||| ||||||||||||    
T  11545071 acaacatgtcatacttatcttcaaggttttgtttgaatgtgaggagtgcat 11545121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 44144707 - 44144623
Alignment:
Q  148 tgcagcaatcttcatttgggtcgtccttccatgtggacaacatgccatactcatcttgaaggccttctttgaatttgaggagtgc 232  Q
    |||||||||||||||| || || ||||||||||| || | || |||||| ||||||||||  |||| ||||||  ||||||||||    
T  44144707 tgcagcaatcttcattaggatcatccttccatgttgaaagcacgccatagtcatcttgaacaccttgtttgaaagtgaggagtgc 44144623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 29228813 - 29228941
Alignment:
Q  84 gaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtgg 183  Q
    |||| |||||||||||| |||||||||||||| ||||| |||||||||         | ||||||||| |||||| || ||||  |||| |||||||||     
T  29228813 gaacgatgcagatcaagactttgaacataaccagtttggttgttgcat--------ttcccatttgcaacaatctgcagttggaccgtctttccatgtga 29228904  T
Q  184 acaacatgccatactcatcttgaaggccttctttgaa 220  Q
    |||||||| ||| |||||||| |||||||| ||||||    
T  29228905 acaacatgacattctcatctttaaggccttgtttgaa 29228941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 29342112 - 29342240
Alignment:
Q  84 gaaccatgcagatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtgg 183  Q
    |||| |||||||||||| |||||||||||||| ||||| |||||||||         | ||||||||| |||||| || ||||  |||| |||||||||     
T  29342112 gaacgatgcagatcaagactttgaacataaccagtttggttgttgcat--------ttcccatttgcaacaatctgcagttggaccgtctttccatgtga 29342203  T
Q  184 acaacatgccatactcatcttgaaggccttctttgaa 220  Q
    |||||||| ||| |||||||| |||||||| ||||||    
T  29342204 acaacatgacattctcatctttaaggccttgtttgaa 29342240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 29228597 - 29228631
Alignment:
Q  3 agatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||| ||||||||||||||||||||||||||||||    
T  29228597 agatcaaggtgttgcaattgtgagagatttccaag 29228631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 29341896 - 29341930
Alignment:
Q  3 agatgaaggtgttgcaattgtgagagatttccaag 37  Q
    |||| ||||||||||||||||||||||||||||||    
T  29341896 agatcaaggtgttgcaattgtgagagatttccaag 29341930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University