View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_low_33 (Length: 249)

Name: NF18958_low_33
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_low_33
NF18958_low_33
[»] chr1 (20 HSPs)
chr1 (1-242)||(17284069-17284310)
chr1 (40-103)||(28287346-28287409)
chr1 (57-98)||(10324953-10324994)
chr1 (40-101)||(11049262-11049323)
chr1 (57-103)||(213547-213593)
chr1 (62-103)||(7790652-7790693)
chr1 (56-101)||(48473511-48473556)
chr1 (40-103)||(1514355-1514418)
chr1 (57-103)||(6021833-6021879)
chr1 (57-103)||(7524142-7524188)
chr1 (40-98)||(43018476-43018534)
chr1 (61-99)||(52013492-52013530)
chr1 (51-92)||(29759635-29759676)
chr1 (57-90)||(33693050-33693083)
chr1 (58-99)||(39395918-39395959)
chr1 (55-103)||(20720843-20720891)
chr1 (75-103)||(27500332-27500360)
chr1 (67-103)||(32088585-32088621)
chr1 (67-103)||(43959634-43959670)
chr1 (71-103)||(52263657-52263689)
[»] chr2 (17 HSPs)
chr2 (49-103)||(44439275-44439329)
chr2 (48-103)||(33502257-33502312)
chr2 (58-101)||(33961993-33962036)
chr2 (59-105)||(7139706-7139752)
chr2 (57-103)||(42741006-42741052)
chr2 (57-101)||(13475904-13475948)
chr2 (57-104)||(13246768-13246815)
chr2 (44-83)||(32596007-32596046)
chr2 (57-103)||(3476439-3476485)
chr2 (49-95)||(8481285-8481331)
chr2 (65-103)||(37420205-37420243)
chr2 (57-106)||(1305921-1305970)
chr2 (57-98)||(10618956-10618997)
chr2 (49-102)||(13482040-13482093)
chr2 (57-101)||(4894169-4894213)
chr2 (63-103)||(16013720-16013760)
chr2 (70-106)||(33541907-33541943)
[»] chr4 (15 HSPs)
chr4 (51-104)||(33844000-33844053)
chr4 (51-99)||(4243410-4243458)
chr4 (57-103)||(10185223-10185269)
chr4 (57-102)||(45329877-45329922)
chr4 (58-98)||(47596316-47596356)
chr4 (40-94)||(35065075-35065129)
chr4 (57-103)||(37439174-37439220)
chr4 (35-103)||(32818380-32818448)
chr4 (51-102)||(2206354-2206405)
chr4 (72-103)||(32100336-32100367)
chr4 (51-98)||(33843706-33843753)
chr4 (40-103)||(49138773-49138836)
chr4 (57-103)||(7066591-7066637)
chr4 (57-98)||(17714697-17714738)
chr4 (58-98)||(41751287-41751327)
[»] chr6 (13 HSPs)
chr6 (51-103)||(1485156-1485208)
chr6 (57-103)||(34027427-34027473)
chr6 (51-103)||(31305857-31305909)
chr6 (51-102)||(9505793-9505844)
chr6 (58-101)||(30926790-30926833)
chr6 (57-103)||(2234544-2234591)
chr6 (61-103)||(882719-882761)
chr6 (57-103)||(10874523-10874569)
chr6 (57-103)||(17225881-17225927)
chr6 (61-103)||(34620919-34620961)
chr6 (61-103)||(34748356-34748398)
chr6 (57-106)||(26679979-26680028)
chr6 (58-103)||(34898726-34898771)
[»] chr5 (6 HSPs)
chr5 (55-98)||(24306111-24306154)
chr5 (55-98)||(24367162-24367205)
chr5 (50-102)||(35108261-35108313)
chr5 (58-101)||(8506718-8506761)
chr5 (73-103)||(7925431-7925461)
chr5 (70-103)||(10898763-10898796)
[»] chr3 (16 HSPs)
chr3 (57-103)||(46853544-46853590)
chr3 (49-102)||(4526153-4526206)
chr3 (51-103)||(38332564-38332616)
chr3 (57-93)||(32523360-32523396)
chr3 (57-101)||(35264423-35264467)
chr3 (40-99)||(25113967-25114026)
chr3 (57-103)||(35058390-35058437)
chr3 (55-94)||(50550601-50550640)
chr3 (61-103)||(27266804-27266846)
chr3 (57-103)||(37335044-37335090)
chr3 (67-101)||(37703138-37703172)
chr3 (51-100)||(23187868-23187917)
chr3 (69-102)||(24916534-24916567)
chr3 (51-100)||(44958619-44958668)
chr3 (57-98)||(51285599-51285640)
chr3 (58-102)||(30301009-30301053)
[»] chr8 (9 HSPs)
chr8 (35-103)||(26100156-26100224)
chr8 (61-101)||(35495293-35495333)
chr8 (57-104)||(34478203-34478250)
chr8 (57-103)||(13384664-13384710)
chr8 (61-103)||(39648151-39648193)
chr8 (74-103)||(37158688-37158717)
chr8 (57-101)||(4336637-4336681)
chr8 (40-92)||(4554347-4554399)
chr8 (40-104)||(35495002-35495066)
[»] scaffold0361 (1 HSPs)
scaffold0361 (61-103)||(14124-14166)
[»] chr7 (5 HSPs)
chr7 (57-98)||(30182311-30182352)
chr7 (51-103)||(27571885-27571937)
chr7 (63-103)||(38123676-38123716)
chr7 (73-103)||(18349820-18349850)
chr7 (55-103)||(41788343-41788391)
[»] scaffold0276 (1 HSPs)
scaffold0276 (57-93)||(2654-2690)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 17284069 - 17284310
Alignment:
Q  1 ctagaattgaatattccttcataattgattttattattagaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17284069 ctagaattgaatattccttcataattgattttattattagaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttca 17284168  T
Q  101 acttgtgaggtgaacatgaatttttattgatacaatgccttatatagaagctgaatagaaatgaagttcatctaactgtgttacttgtaaaacaagtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17284169 acttgtgaggtgaacatgaatttttattgatacaatgccttatatagaagctgaatagaaatgaagttcatctaactgtgttacttgtaaaacaagtaac 17284268  T
Q  201 ctctatatttggtagaatcaactacttttccaccttcatctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17284269 ctctatatttggtagaatcaactacttttccaccttcatctc 17284310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 28287409 - 28287346
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||| ||||| | ||||||||| || |||||||||| |||||||||||||||||||||||    
T  28287409 gaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaact 28287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 10324994 - 10324953
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  10324994 cttttgattctataattgatttttacactcaaatttattgtt 10324953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 11049262 - 11049323
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    ||||| || ||||| | |||||||||||||||||||||||||||| ||||||||| ||||||    
T  11049262 gaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaa 11049323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 213593 - 213547
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||||    
T  213593 cttttgattctagaattgatttttaaactcaaatttgttgttcaact 213547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 7790693 - 7790652
Alignment:
Q  62 gattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||||| ||||||||||||||| ||||||||||||||||||    
T  7790693 gattctataattgatttttacacacaaatttattgttcaact 7790652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 48473556 - 48473511
Alignment:
Q  56 acttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    |||||| ||| |||| ||||||||||||||||||||||||||||||    
T  48473556 acttttcattttaaatttgatttttacactcaaatttattgttcaa 48473511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 1514355 - 1514418
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| || ||||| | ||||| ||| || ||||||||||||||| ||||||||||||||||||    
T  1514355 gaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaact 1514418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 6021833 - 6021879
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| ||| ||||||||||||||| ||||| ||||||||    
T  6021833 cttttgattctataatagatttttacactcaagtttatggttcaact 6021879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 7524142 - 7524188
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||||||| || ||||||||||||||| ||||||||| ||||||||    
T  7524142 cttttgattatagaattgatttttacacacaaatttatagttcaact 7524188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 43018476 - 43018534
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    ||||| || |||||||| |||| |||||| ||||||| |||| ||||||||||||||||    
T  43018476 gaagctagaatttggaatttttaattctagaattgatgtttagactcaaatttattgtt 43018534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 52013530 - 52013492
Alignment:
Q  61 tgattctaaaattgatttttacactcaaatttattgttc 99  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  52013530 tgattctagaattgatttttacactcaaatttactgttc 52013492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 29759635 - 29759676
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaattt 92  Q
    ||||| ||| |||||||| |||||||||||||||||||||||    
T  29759635 ttggagcttctgattctataattgatttttacactcaaattt 29759676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 33693050 - 33693083
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaat 90  Q
    |||||||||||| |||||||||||||||||||||    
T  33693050 cttttgattctataattgatttttacactcaaat 33693083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 39395918 - 39395959
Alignment:
Q  58 ttttgattctaaaattgatttttacactcaaatttattgttc 99  Q
    |||| |||||| |||| |||||||||||||||||||||||||    
T  39395918 tttttattctagaattaatttttacactcaaatttattgttc 39395959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 20720843 - 20720891
Alignment:
Q  55 aacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| |||||||| |||||||||||||| ||||||||||  |||||||    
T  20720843 aacttatgattctagaattgatttttacaatcaaatttatccttcaact 20720891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 27500332 - 27500360
Alignment:
Q  75 atttttacactcaaatttattgttcaact 103  Q
    |||||||||||||||||||||||||||||    
T  27500332 atttttacactcaaatttattgttcaact 27500360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 32088621 - 32088585
Alignment:
Q  67 taaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  32088621 taaaagtgatttttacactgaaatttattgttcaact 32088585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 43959634 - 43959670
Alignment:
Q  67 taaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  43959634 taaaattgatttttagactcaaatttattgtttaact 43959670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 52263689 - 52263657
Alignment:
Q  71 attgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||||||||||||||||||| ||||    
T  52263689 attgatttttacactcaaatttattgtttaact 52263657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 44439275 - 44439329
Alignment:
Q  49 atttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  44439275 atttggagcttttgattctaaaattgattttaacactcaaatttattgttcaact 44439329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 33502257 - 33502312
Alignment:
Q  48 tatttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||| |||||||||||||||||||||||||||||| || |||||| ||||||||    
T  33502257 tatttgtaacttttgattctaaaattgatttttacacacatatttatagttcaact 33502312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 33962036 - 33961993
Alignment:
Q  58 ttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  33962036 ttttgattctataattgatttttagactcaaatttattgttcaa 33961993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 7139706 - 7139752
Alignment:
Q  59 tttgattctaaaattgatttttacactcaaatttattgttcaacttg 105  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||||    
T  7139706 tttgattctagaattgatttttacaatcaaatttattgtccaacttg 7139752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 42741006 - 42741052
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| |||||||||||||||||||||||| ||| |||||    
T  42741006 cttttgattctagaattgatttttacactcaaatttactgtccaact 42741052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 13475904 - 13475948
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||||    
T  13475904 cttttgaatctaaaagtgatttttacacttaaatttattgttcaa 13475948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 13246768 - 13246815
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaactt 104  Q
    |||||||||| |||  |||||||||||||||||||||||| |||||||    
T  13246768 cttttgattccaaacgtgatttttacactcaaatttattgatcaactt 13246815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 32596007 - 32596046
Alignment:
Q  44 caagtatttggaacttttgattctaaaattgatttttaca 83  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  32596007 caagaatttgtaacttttgattctaaaattgatttttaca 32596046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 3476485 - 3476439
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| |||| ||||||||| |||||| ||||||||||||    
T  3476485 cttttgattctagaatttatttttacattcaaatgtattgttcaact 3476439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 8481331 - 8481285
Alignment:
Q  49 atttggaacttttgattctaaaattgatttttacactcaaatttatt 95  Q
    ||||||| |||||||||| | |||||||||||| |||||||||||||    
T  8481331 atttggagcttttgattcaagaattgatttttagactcaaatttatt 8481285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 37420243 - 37420205
Alignment:
Q  65 tctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  37420243 tctagaattgatttttacactcaaatttattattcaact 37420205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 1305921 - 1305970
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaacttgt 106  Q
    ||||||||| |  |||||||||||||| |||| |||||||||||||||||    
T  1305921 cttttgattattgaattgatttttacagtcaagtttattgttcaacttgt 1305970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 10618997 - 10618956
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    |||||||||||| |||||||||| |||||||||||| |||||    
T  10618997 cttttgattctataattgattttaacactcaaatttgttgtt 10618956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 13482040 - 13482093
Alignment:
Q  49 atttggaacttttgattctaaaattgatttttacactcaaatttattgttcaac 102  Q
    ||||| ||||||| | | ||||| ||||||||||| ||||||||||||||||||    
T  13482040 atttgaaacttttaactttaaaagtgatttttacattcaaatttattgttcaac 13482093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 4894213 - 4894169
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    |||||||||||| |||||||| ||| ||||||||||||| |||||    
T  4894213 cttttgattctataattgattattatactcaaatttattattcaa 4894169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 16013760 - 16013720
Alignment:
Q  63 attctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||| || |||||||||||||||||||||||| ||||||    
T  16013760 attctagaaatgatttttacactcaaatttattggtcaact 16013720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 33541943 - 33541907
Alignment:
Q  70 aattgatttttacactcaaatttattgttcaacttgt 106  Q
    |||||||||||| || |||||||||||||||||||||    
T  33541943 aattgatttttaaacgcaaatttattgttcaacttgt 33541907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 33844000 - 33844053
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttcaactt 104  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33844000 ttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactt 33844053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 4243410 - 4243458
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttc 99  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  4243410 ttggagcttttgattctagaattgatttttacactcaaatttattgttc 4243458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 10185223 - 10185269
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  10185223 cttttgattctaaaattgatctttacactcaaatttattgtttaact 10185269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 45329877 - 45329922
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaac 102  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  45329877 cttttgattctaaaattgatatttacactcaaattttttgttcaac 45329922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 47596356 - 47596316
Alignment:
Q  58 ttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  47596356 ttttgattataaaattgatttttacactcaaatttattgtt 47596316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 35065075 - 35065129
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttat 94  Q
    ||||| ||||||||  ||||||||||||| ||||||||||||||| |||||||||    
T  35065075 gaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttat 35065129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 37439174 - 37439220
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  37439174 cttttaattctataattgatttttacactcaattttattgttcaact 37439220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 32818448 - 32818380
Alignment:
Q  35 tattagaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||| ||||| || ||||| | |||||||||||| ||||||||||| ||| ||||||||| ||||||||    
T  32818448 tatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaact 32818380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 2206405 - 2206354
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttcaac 102  Q
    ||||| ||||||||||||  |||||||||| ||||||||||||| |||||||    
T  2206405 ttggagcttttgattctaggattgatttttgcactcaaatttatcgttcaac 2206354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 103
Target Start/End: Original strand, 32100336 - 32100367
Alignment:
Q  72 ttgatttttacactcaaatttattgttcaact 103  Q
    ||||||||||||||||||||||||||||||||    
T  32100336 ttgatttttacactcaaatttattgttcaact 32100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 33843706 - 33843753
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    ||||| ||||| || |||||||||||||| ||||||||||||||||||    
T  33843706 ttggagctttttatcctaaaattgattttaacactcaaatttattgtt 33843753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 49138836 - 49138773
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| || ||||| ||||||||||||||||||||||||||| || |||  |||| ||||||||    
T  49138836 gaagctaggatttgtaacttttgattctaaaattgatttttatacacaagcttatagttcaact 49138773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 7066637 - 7066591
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| ||| |||||| |||||||||||||||||| ||||    
T  7066637 cttttgattctacaatggattttcacactcaaatttattgttaaact 7066591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 17714697 - 17714738
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    ||||||||| || ||||||||||| |||||||||||||||||    
T  17714697 cttttgattatagaattgatttttgcactcaaatttattgtt 17714738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 41751327 - 41751287
Alignment:
Q  58 ttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    ||||||||||| |||||||||||| ||| ||||||||||||    
T  41751327 ttttgattctagaattgatttttaaacttaaatttattgtt 41751287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 1485208 - 1485156
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  1485208 ttggagcttttgattctagaattgattttaacactcaaatttattgttcaact 1485156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 34027473 - 34027427
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||    
T  34027473 cttttgattctagaattgatttttacactcaaatttattattcaact 34027427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 31305909 - 31305857
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||    
T  31305909 ttggagcttttgattctagaattgatttatacactcaaatttattgatcaact 31305857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 9505793 - 9505844
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttcaac 102  Q
    ||||| ||||||||||||  ||||||||||| ||||||||||||||||||||    
T  9505793 ttggagcttttgattctatgattgatttttaaactcaaatttattgttcaac 9505844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 30926833 - 30926790
Alignment:
Q  58 ttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    |||| |||||| ||||||||||||||||||||||||||||||||    
T  30926833 tttttattctagaattgatttttacactcaaatttattgttcaa 30926790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 2234544 - 2234591
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaattta-ttgttcaact 103  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  2234544 cttttgattctagaattgattttaacactcaaatttatttgttcaact 2234591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 882719 - 882761
Alignment:
Q  61 tgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  882719 tgattcaaaaattgatttttacattcaaatttattgtttaact 882761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 10874523 - 10874569
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| |||||||||||||| ||||| ||| |||||||||    
T  10874523 cttttgattctagaattgatttttacattcaaacttagtgttcaact 10874569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 17225881 - 17225927
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| ||||||||||||||  ||||||||| ||||||||    
T  17225881 cttttgattctagaattgatttttacatacaaatttatagttcaact 17225927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 34620919 - 34620961
Alignment:
Q  61 tgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||| |||||||||||||||| ||||||||| |||||||    
T  34620919 tgattctagaattgatttttacactaaaatttatttttcaact 34620961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 34748356 - 34748398
Alignment:
Q  61 tgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||| |||||||||||||||| ||||||||| |||||||    
T  34748356 tgattctagaattgatttttacactaaaatttatttttcaact 34748398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 26679979 - 26680028
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaacttgt 106  Q
    ||||||||| |  |||||||||||||| |||| |||||||||||||||||    
T  26679979 cttttgattattgaattgatttttacagtcaagtttattgttcaacttgt 26680028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 34898726 - 34898771
Alignment:
Q  58 ttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||| |||||| |||||||||| |||||| ||||||||||||||||    
T  34898726 tttttattctagaattgattttaacactcgaatttattgttcaact 34898771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 24306154 - 24306111
Alignment:
Q  55 aacttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  24306154 aacttttgattctataattgatttttacactcaaatttattgtt 24306111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 24367162 - 24367205
Alignment:
Q  55 aacttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  24367162 aacttttgattctataattgatttttacactcaaatttattgtt 24367205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 35108261 - 35108313
Alignment:
Q  50 tttggaacttttgattctaaaattgatttttacactcaaatttattgttcaac 102  Q
    |||| ||||||||||| ||||| |||||||||||| ||||||||| |||||||    
T  35108261 tttgcaacttttgattttaaaactgatttttacacgcaaatttatagttcaac 35108313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 8506761 - 8506718
Alignment:
Q  58 ttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||    
T  8506761 tttttattctaaaattgagttttacactcacatttattgttcaa 8506718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 7925431 - 7925461
Alignment:
Q  73 tgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||||||||||||||||||||||    
T  7925431 tgatttttacactcaaatttattgttcaact 7925461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 10898763 - 10898796
Alignment:
Q  70 aattgatttttacactcaaatttattgttcaact 103  Q
    ||||||||||||||| ||||||||||||||||||    
T  10898763 aattgatttttacacacaaatttattgttcaact 10898796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 46853590 - 46853544
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  46853590 cttttgattctagaattgattttaacactcaaatttattgttcaact 46853544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 4526153 - 4526206
Alignment:
Q  49 atttggaacttttgattctaaaattgatttttacactcaaatttattgttcaac 102  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  4526153 atttgtaacttttgattttaaaattgatttttacacacaaatttatagttcaac 4526206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 38332616 - 38332564
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| ||| |||||||||||||| | ||||||||||||||||||||||||||    
T  38332616 ttggagcttctgattctaaaattggtatttacactcaaatttattgttcaact 38332564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 32523396 - 32523360
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaattta 93  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32523396 cttttgattctaaaattgatttttacacacaaattta 32523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 35264467 - 35264423
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||    
T  35264467 cttttgattctagaattgattttaacacttaaatttattgttcaa 35264423  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 25113967 - 25114026
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttc 99  Q
    |||||||| | || ||||||||| || ||||||||||||| ||||| |||||||||||||    
T  25113967 gaagcaagaaattagaacttttggttataaaattgattttcacactaaaatttattgttc 25114026  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 35058390 - 35058437
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaat-ttattgttcaact 103  Q
    |||||||||||| |||||||||| |||||||||| |||||||||||||    
T  35058390 cttttgattctagaattgattttaacactcaaatattattgttcaact 35058437  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 50550601 - 50550640
Alignment:
Q  55 aacttttgattctaaaattgatttttacactcaaatttat 94  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  50550601 aacttttgattctaaaattgattttcacacacaaatttat 50550640  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 27266846 - 27266804
Alignment:
Q  61 tgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||| | |||| |||||||||||||||||||||||||||||    
T  27266846 tgattcaagaattaatttttacactcaaatttattgttcaact 27266804  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 37335090 - 37335044
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| ||||||||||||||||  |||| |||||||||||    
T  37335090 cttttgattctagaattgatttttacacttgaattcattgttcaact 37335044  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 37703138 - 37703172
Alignment:
Q  67 taaaattgatttttacactcaaatttattgttcaa 101  Q
    ||||||| |||||||||||||||||||||||||||    
T  37703138 taaaattaatttttacactcaaatttattgttcaa 37703172  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 23187868 - 23187917
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttca 100  Q
    ||||| ||||| |||||| |||||| |||||||||||||||| |||||||    
T  23187868 ttggagcttttaattctagaattgaattttacactcaaatttgttgttca 23187917  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 24916534 - 24916567
Alignment:
Q  69 aaattgatttttacactcaaatttattgttcaac 102  Q
    |||||||||||||||||||| |||||||||||||    
T  24916534 aaattgatttttacactcaagtttattgttcaac 24916567  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 44958668 - 44958619
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttca 100  Q
    ||||| |||||||||||| || ||||||| |||||||| |||||||||||    
T  44958668 ttggagcttttgattctagaaatgattttaacactcaactttattgttca 44958619  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 51285599 - 51285640
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    |||||||||||| ||||||||||| ||||||||||| |||||    
T  51285599 cttttgattctagaattgatttttgcactcaaatttgttgtt 51285640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 30301053 - 30301009
Alignment:
Q  58 ttttgattctaaaattgatttttacactcaaatttattgttcaac 102  Q
    |||| |||||| ||||| |||| ||||||||||||||||||||||    
T  30301053 ttttaattctagaattggttttaacactcaaatttattgttcaac 30301009  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 26100224 - 26100156
Alignment:
Q  35 tattagaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||| ||||| || ||||| | |||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  26100224 tatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaact 26100156  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 35495293 - 35495333
Alignment:
Q  61 tgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  35495293 tgattctataattgatttttatactcaaatttattgttcaa 35495333  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 34478250 - 34478203
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaactt 104  Q
    ||||||||| || |||| ||||||| ||||||||||||||||||||||    
T  34478250 cttttgattttagaattcatttttatactcaaatttattgttcaactt 34478203  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 13384710 - 13384664
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||| |||||||||| |||| ||||||||| ||||||||    
T  13384710 cttttgattctagaattgattttcacacacaaatttatagttcaact 13384664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 39648193 - 39648151
Alignment:
Q  61 tgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||| ||||||||||||||||||||||  ||||||||||    
T  39648193 tgattctagaattgatttttacactcaaattgtttgttcaact 39648151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 103
Target Start/End: Complemental strand, 37158717 - 37158688
Alignment:
Q  74 gatttttacactcaaatttattgttcaact 103  Q
    ||||||||||||||||||||||||||||||    
T  37158717 gatttttacactcaaatttattgttcaact 37158688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 4336681 - 4336637
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgttcaa 101  Q
    ||||| ||| || |||| |||||||||||||||||||||||||||    
T  4336681 ctttttattttagaattaatttttacactcaaatttattgttcaa 4336637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 4554347 - 4554399
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaattt 92  Q
    |||||||| | || || |||||||| |||||||||||||||| ||||||||||    
T  4554347 gaagcaagaaatttgagcttttgatactaaaattgatttttatactcaaattt 4554399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 35495002 - 35495066
Alignment:
Q  40 gaagcaagtatttggaacttttgattctaaaattgatttttacactcaaatttattgttcaactt 104  Q
    ||||| || ||||| | |||||||||||| ||||| ||||||||| ||||| ||| |||||||||    
T  35495002 gaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaactt 35495066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 14166 - 14124
Alignment:
Q  61 tgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  14166 tgattctagaattgatttttacactcaaatttatttttcaact 14124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 30182352 - 30182311
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaatttattgtt 98  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  30182352 cttttgattctagaattaatttttacactcaaatttattgtt 30182311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 27571885 - 27571937
Alignment:
Q  51 ttggaacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||| |||||||||||| |||||||||| |||||||| |||||| |||||||    
T  27571885 ttggagcttttgattctagaattgattttaacactcaagtttattattcaact 27571937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 38123716 - 38123676
Alignment:
Q  63 attctaaaattgatttttacactcaaatttattgttcaact 103  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  38123716 attctagaattgatttttacactcaaatttattggtcaact 38123676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 18349820 - 18349850
Alignment:
Q  73 tgatttttacactcaaatttattgttcaact 103  Q
    |||||||||||||||||||||||||||||||    
T  18349820 tgatttttacactcaaatttattgttcaact 18349850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 41788343 - 41788391
Alignment:
Q  55 aacttttgattctaaaattgatttttacactcaaatttattgttcaact 103  Q
    ||||||||| |||| |||||||||| ||||||||||||  |||||||||    
T  41788343 aacttttgagtctataattgattttaacactcaaatttgctgttcaact 41788391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 2654 - 2690
Alignment:
Q  57 cttttgattctaaaattgatttttacactcaaattta 93  Q
    |||||||||||||||||||||||||||  ||||||||    
T  2654 cttttgattctaaaattgatttttacatacaaattta 2690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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