View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_low_34 (Length: 248)

Name: NF18958_low_34
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_low_34
NF18958_low_34
[»] chr7 (7 HSPs)
chr7 (18-248)||(42848260-42848486)
chr7 (18-248)||(42854816-42855031)
chr7 (18-58)||(42856457-42856497)
chr7 (18-58)||(42860524-42860564)
chr7 (200-248)||(42856620-42856669)
chr7 (200-248)||(42860697-42860746)
chr7 (18-106)||(42852921-42853009)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 42848260 - 42848486
Alignment:
Q  18 attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaattaattagattactctctgtctacgggtgttccacctgcnnnnnnn 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||           
T  42848260 attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaatta----gattactctctgtctacgggtgttccacctgctttgttt 42848355  T
Q  118 nnnnnnnnnnngactctgatacaatataatatatgtgcatgagatgtatatcatgatattctttttcattcttgtcgattagcaataataaatactttac 217  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42848356 tttttttttttgactctgatacaatataatatatgtgcatgagatgtatatcatgatattctttttcattcttgtcgattagcaataataaatactttac 42848455  T
Q  218 attttaccttccagctttgtgatcttaatgc 248  Q
    |||||||||||||||||||||||||||||||    
T  42848456 attttaccttccagctttgtgatcttaatgc 42848486  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 42854816 - 42855031
Alignment:
Q  18 attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaattaattagattactctctgtctacgggtgttccacctgcnnnnnnn 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| | || ||||| ||||||           
T  42854816 attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaatta----gattactctctgtcaatggatgttcgacctgcctttgtt 42854911  T
Q  118 nnnnnnnnnnngactctgatacaatataatatatgtgcatgagatgtatatcatgatattctttttcattcttgtcgattagcaataataaatactttac 217  Q
               ||||| |||||||||||||||  |||||| ||||  |||||||| |||||||| ||||||||||||||  ||||||||| ||| |||||    
T  42854912 tttt-------gactcagatacaatataatat--gtgcataagat--atatcatggtattctttctcattcttgtcgatccgcaataatagatattttac 42855000  T
Q  218 attttaccttccagctttgtgatcttaatgc 248  Q
    |||||| ||||||||||||||||||||||||    
T  42855001 attttaacttccagctttgtgatcttaatgc 42855031  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 42856457 - 42856497
Alignment:
Q  18 attctatcaaagttattgattaggatcactgcagtatatat 58  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  42856457 attctgtcaaagttattgattaggatcactgcagtatatat 42856497  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 42860524 - 42860564
Alignment:
Q  18 attctatcaaagttattgattaggatcactgcagtatatat 58  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  42860524 attctgtcaaagttattgattaggatcactgcagtatatat 42860564  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 42856620 - 42856669
Alignment:
Q  200 caataataaatactttacattttacctt-ccagctttgtgatcttaatgc 248  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  42856620 caataatagatattttacattttacctttccagctttgtgatcttaatgc 42856669  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 42860697 - 42860746
Alignment:
Q  200 caataataaatactttacattttacctt-ccagctttgtgatcttaatgc 248  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  42860697 caataatagatattttacattttacctttccagctttgtgatcttaatgc 42860746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 42852921 - 42853009
Alignment:
Q  18 attctatcaaagttattgattaggatcactgcagtatatatgtccttaagtcaattaattagattactctctgtctacgggtgttccac 106  Q
    ||||||||||||||||||||| |||| ||| ||||| ||||||| | || | | |  ||||||||| |||||||||| | |||||||||    
T  42852921 attctatcaaagttattgatttggattactacagtacatatgtcatgaattaagtcgattagattaatctctgtctatgtgtgttccac 42853009  T

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