View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_40 (Length: 237)
Name: NF18958_low_40
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_40 |
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| [»] scaffold0511 (2 HSPs) |
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| [»] scaffold0230 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 18875608 - 18875830
Alignment:
| Q |
1 |
tagctcacgttcctgaattggagttaatttcagaagacacatactatagtaatatactga-tcccttgcttatttcaactttgtctttatgtagcaccga |
99 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
18875608 |
tagctcacgttcctgaattggagttaattgcagaagacacatactatagtaatatactgaatcccttgcttatttcatctttgtctttatgtagcaccga |
18875707 |
T |
|
| Q |
100 |
cacttttcttttaaggcttgtccctatgtctcacacttacaccggaccgacgtatgtaattacattgaatcagttgacttctattttctcaaattattat |
199 |
Q |
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||| ||||||||||||| | |||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18875708 |
cacatttcttttaaggcgtatcccgatgtctcacacttacaccgaaccgacgtatgtagttacattgaatcacttgacttctattttctcaaattattat |
18875807 |
T |
|
| Q |
200 |
cagtgtctaatgtttgtgttagt |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
18875808 |
cagtgtctaatgtttgtgttagt |
18875830 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 18808608 - 18808815
Alignment:
| Q |
1 |
tagctcacgttcctgaattggagttaatttcagaagacacatactatagtaatatactg-atcccttgcttatttcaactttgtctttatgtagcaccga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| | |
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|
| T |
18808608 |
tagctcacgttcctgaattggagttaattacaatatacacatactatagtaatatactgaatcccttgcttatttcatcttgttctttatgtagcaccaa |
18808707 |
T |
|
| Q |
100 |
cacttttcttttaaggcttgtccctatgtctcacacttacaccggaccgacgtatgtaattacattgaatcagttgacttctattttctcaaattattat |
199 |
Q |
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||||||| ||||||||||| | || |||||||||||||||| |||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
18808708 |
cacttttgttttaaggctt-ttccggtgtctcacacttacacgacaccgacaaatgtagttacattaaatcacttgacttctattttctcaaattattat |
18808806 |
T |
|
| Q |
200 |
cagtgtcta |
208 |
Q |
| |
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||||||| |
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| T |
18808807 |
ttgtgtcta |
18808815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 18790571 - 18790609
Alignment:
| Q |
161 |
acattgaatcagttgacttctattttctcaaattattat |
199 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
18790571 |
acattgaatcacttgacttctattttctcaaattattat |
18790609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 10666649 - 10666681
Alignment:
| Q |
176 |
acttctattttctcaaattattatcagtgtcta |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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|
| T |
10666649 |
acttctattttctcaaattattattagtgtcta |
10666681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 29236288 - 29236256
Alignment:
| Q |
176 |
acttctattttctcaaattattatcagtgtcta |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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|
| T |
29236288 |
acttctattttctcaaattattattagtgtcta |
29236256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3586 - 3806
Alignment:
| Q |
1 |
tagctcacgttcctgaattggagttaatttcagaagacacatactatagtaatatactga-tcccttgcttatttcaactttgtctttatgtagcaccga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||| |
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|
| T |
3586 |
tagctcacgttcctgaattggagttaattgcaaaaaaaacatactagagtaatatactgaatcccttgcttatttcatct--gtctttatgtagcaccga |
3683 |
T |
|
| Q |
100 |
cacttttcttttaaggcttgtccctatgtctcacacttacaccggaccgacgtatgtaattacattgaatcagttgacttctattttctcaaattattat |
199 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
3684 |
cacttttcttttaaggcttatcccgatgtctcacacttacaccggaacgacgtatgtagttacattgaatcacttgacttctattttctcaaattattat |
3783 |
T |
|
| Q |
200 |
cagtgtctaatgtttgtgttagt |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
3784 |
cagtgtctaatgtttgtgttagt |
3806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 7102 - 6895
Alignment:
| Q |
1 |
tagctcacgttcctgaattggagttaatttcagaagacacatactatagtaatatactga-tcccttgcttatttcaactttgtctttatgtagcaccga |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||| || | ||||||||||||||| |||||||| |||||||||||||||| ||| ||||||||||||||| | |
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|
| T |
7102 |
tagctcacgttcctaaattggagttaattacaatatacacatactatagtattatactgaatcccttgcttatttcatcttgttctttatgtagcaccaa |
7003 |
T |
|
| Q |
100 |
cacttttcttttaaggcttgtccctatgtctcacacttacaccggaccgacgtatgtaattacattgaatcagttgacttctattttctcaaattattat |
199 |
Q |
| |
|
||||||| ||||||||||| | || | |||||||||||||| ||| || ||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
7002 |
cacttttgttttaaggctt-ttccggtttctcacacttacacaacaccaacaaatgtagttacattaaatcacttgacttctattttctcaaattattat |
6904 |
T |
|
| Q |
200 |
cagtgtcta |
208 |
Q |
| |
|
||||||| |
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|
| T |
6903 |
ttgtgtcta |
6895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2414 - 2207
Alignment:
| Q |
1 |
tagctcacgttcctgaattggagttaatttcagaagacacatactatagtaatatactga-tcccttgcttatttcaactttgtctttatgtagcaccga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| ||| ||||||||||||||| |||||||||||||||| ||| ||||||||||| ||| | |
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|
| T |
2414 |
tagctcacgttcctgaattggagttaattaccatatacacctaccatagtaatatactgaatcccttgcttatttcatcttgttctttatgtaggaccaa |
2315 |
T |
|
| Q |
100 |
cacttttcttttaaggcttgtccctatgtctcacacttacaccggaccgacgtatgtaattacattgaatcagttgacttctattttctcaaattattat |
199 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||||||||| |||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
2314 |
cacttttgttttaaggcttttccgg-tgtctcacacttacacgacaccgacaaatgtagttacattaaatcacttgacttctattttctcaaattattat |
2216 |
T |
|
| Q |
200 |
cagtgtcta |
208 |
Q |
| |
|
||||||| |
|
|
| T |
2215 |
ttgtgtcta |
2207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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