View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_44 (Length: 224)
Name: NF18958_low_44
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 8331474 - 8331399
Alignment:
| Q |
132 |
gttcctctcaggtgtgactcatcatccactttgagatcagactcgtttgccaaatcatccacggccacatcatctt |
207 |
Q |
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| T |
8331474 |
gttcctctcagctgtgactgatcatccactttgagatcagactcgtttgccaaatcatccacggccacatcatctt |
8331399 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 8331590 - 8331552
Alignment:
| Q |
18 |
atagggaagaaagacaacaagaagatggaagaaccaaag |
56 |
Q |
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| T |
8331590 |
atagggaagaaagacaacaagaagatggaagaaccaaag |
8331552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 27823755 - 27823723
Alignment:
| Q |
22 |
ggaagaaagacaacaagaagatggaagaaccaa |
54 |
Q |
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| T |
27823755 |
ggaagaaagacaagaagaagatggaagaaccaa |
27823723 |
T |
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