View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_low_46 (Length: 223)

Name: NF18958_low_46
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_low_46
NF18958_low_46
[»] chr4 (15 HSPs)
chr4 (1-208)||(29088087-29088295)
chr4 (2-62)||(16402203-16402263)
chr4 (2-51)||(24343514-24343563)
chr4 (3-51)||(22440603-22440651)
chr4 (3-90)||(28964212-28964299)
chr4 (3-109)||(21945511-21945617)
chr4 (3-46)||(36635332-36635375)
chr4 (2-40)||(32910558-32910596)
chr4 (3-44)||(903930-903971)
chr4 (3-48)||(5775364-5775409)
chr4 (2-47)||(18513248-18513293)
chr4 (2-51)||(19230312-19230361)
chr4 (2-51)||(20743281-20743330)
chr4 (2-47)||(31243555-31243600)
chr4 (3-48)||(40613458-40613503)
[»] chr3 (15 HSPs)
chr3 (2-91)||(24205004-24205093)
chr3 (1-99)||(26665142-26665240)
chr3 (2-48)||(20691326-20691372)
chr3 (13-48)||(2941576-2941611)
chr3 (3-46)||(16192758-16192801)
chr3 (1-51)||(41319313-41319363)
chr3 (2-51)||(3730168-3730217)
chr3 (3-48)||(7928458-7928503)
chr3 (3-48)||(8039841-8039886)
chr3 (3-48)||(25093510-25093555)
chr3 (3-48)||(28576724-28576769)
chr3 (2-58)||(25365469-25365525)
chr3 (3-47)||(32804547-32804591)
chr3 (3-51)||(34307783-34307831)
chr3 (3-47)||(49505161-49505205)
[»] chr5 (17 HSPs)
chr5 (2-91)||(7997129-7997218)
chr5 (2-91)||(18586252-18586340)
chr5 (3-48)||(3966511-3966556)
chr5 (2-51)||(25863211-25863260)
chr5 (3-90)||(28588638-28588725)
chr5 (3-90)||(30502352-30502439)
chr5 (3-90)||(30542695-30542782)
chr5 (3-51)||(31264446-31264494)
chr5 (13-48)||(6401516-6401551)
chr5 (3-46)||(6471897-6471940)
chr5 (5-48)||(18421847-18421890)
chr5 (1-51)||(31695398-31695448)
chr5 (2-51)||(5467981-5468030)
chr5 (9-54)||(26205760-26205805)
chr5 (3-48)||(36838551-36838596)
chr5 (3-48)||(41091263-41091308)
chr5 (2-46)||(38749571-38749615)
[»] chr1 (16 HSPs)
chr1 (2-73)||(22794059-22794130)
chr1 (3-58)||(1864875-1864931)
chr1 (3-47)||(7918218-7918262)
chr1 (3-90)||(30847683-30847771)
chr1 (2-54)||(40747773-40747825)
chr1 (3-58)||(12443456-12443511)
chr1 (13-48)||(25934634-25934669)
chr1 (5-48)||(44482240-44482283)
chr1 (5-47)||(25361896-25361938)
chr1 (5-46)||(25098563-25098604)
chr1 (3-48)||(36878469-36878514)
chr1 (3-44)||(40181879-40181920)
chr1 (3-47)||(10233261-10233305)
chr1 (5-45)||(19324572-19324612)
chr1 (3-47)||(34712390-34712434)
chr1 (2-46)||(42325567-42325611)
[»] chr8 (17 HSPs)
chr8 (2-51)||(44067523-44067572)
chr8 (3-48)||(34897093-34897138)
chr8 (2-75)||(39820436-39820509)
chr8 (2-90)||(35431104-35431192)
chr8 (3-61)||(7658471-7658530)
chr8 (1-44)||(34201056-34201099)
chr8 (2-48)||(33382025-33382071)
chr8 (14-48)||(43737817-43737851)
chr8 (3-44)||(4611542-4611583)
chr8 (3-48)||(4786344-4786389)
chr8 (3-48)||(11927092-11927137)
chr8 (3-52)||(13203649-13203698)
chr8 (3-48)||(13844602-13844647)
chr8 (3-48)||(14134707-14134752)
chr8 (3-48)||(31236583-31236628)
chr8 (3-47)||(3025559-3025603)
chr8 (3-47)||(24362209-24362253)
[»] chr7 (20 HSPs)
chr7 (2-51)||(43250000-43250049)
chr7 (2-58)||(12278842-12278898)
chr7 (3-90)||(21880160-21880247)
chr7 (5-48)||(9482944-9482987)
chr7 (6-48)||(18233604-18233646)
chr7 (2-48)||(38134412-38134458)
chr7 (3-48)||(5835255-5835300)
chr7 (3-48)||(7328697-7328742)
chr7 (3-48)||(20549799-20549844)
chr7 (3-48)||(26329388-26329433)
chr7 (3-48)||(27732245-27732290)
chr7 (2-54)||(10230073-10230125)
chr7 (6-46)||(17307904-17307944)
chr7 (3-47)||(17851439-17851483)
chr7 (4-48)||(19930947-19930991)
chr7 (8-48)||(22602716-22602756)
chr7 (3-47)||(22868050-22868094)
chr7 (3-90)||(26733312-26733399)
chr7 (3-47)||(32308128-32308172)
chr7 (2-54)||(38804555-38804607)
[»] scaffold0007 (1 HSPs)
scaffold0007 (2-54)||(225268-225320)
[»] chr2 (12 HSPs)
chr2 (2-54)||(10535759-10535811)
chr2 (2-90)||(18570979-18571067)
chr2 (3-90)||(5367200-5367287)
chr2 (3-47)||(35449521-35449565)
chr2 (3-46)||(21616770-21616813)
chr2 (3-88)||(37411210-37411295)
chr2 (3-48)||(12668429-12668474)
chr2 (3-48)||(23718034-23718079)
chr2 (3-48)||(24105706-24105751)
chr2 (2-51)||(25544488-25544537)
chr2 (3-48)||(44860328-44860373)
chr2 (2-58)||(12748691-12748747)
[»] chr6 (15 HSPs)
chr6 (3-48)||(7265599-7265644)
chr6 (3-48)||(9025500-9025545)
chr6 (3-48)||(9195760-9195805)
chr6 (2-51)||(34446572-34446621)
chr6 (3-47)||(19040360-19040404)
chr6 (3-48)||(7086803-7086848)
chr6 (3-48)||(9617442-9617487)
chr6 (7-48)||(11591876-11591917)
chr6 (2-51)||(12235522-12235571)
chr6 (2-63)||(13689184-13689245)
chr6 (3-48)||(13851744-13851789)
chr6 (7-48)||(26562701-26562742)
chr6 (3-48)||(30866150-30866195)
chr6 (2-46)||(7569176-7569220)
chr6 (4-48)||(9629392-9629436)
[»] scaffold0123 (1 HSPs)
scaffold0123 (7-48)||(44531-44572)
[»] scaffold0036 (1 HSPs)
scaffold0036 (3-48)||(9753-9798)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-48)||(135318-135363)
[»] scaffold0044 (1 HSPs)
scaffold0044 (4-48)||(53189-53233)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 29088295 - 29088087
Alignment:
Q  1 aataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacgcatatccgacactagaacacgcctaatttaaggagta 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |    
T  29088295 aataataatttgagaaaatgataaaatacagtgtaattataggcgtcgtgttggacactgacgtatatccgacactagaacacgtctaatttgaggagca 29088196  T
Q  101 tctatgcttaatgtcagtattttattatcattttgtctaactaccggaaaaaat-acgctccatattgcaaaaattggggaagcaactttttaccgtaga 199  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29088195 tccatgcttaatgtcagtattttattatcattttgtctaactaccgaaaaaaataacgctccatattgcaaaaattggggaagcaactttttaccgtaga 29088096  T
Q  200 gctattatt 208  Q
    || ||||||    
T  29088095 gccattatt 29088087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 16402263 - 16402203
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgac 62  Q
    |||||||||||||||||| |||  ||||||||||||||||  |||||||| ||||||||||    
T  16402263 ataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggacactgac 16402203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 24343514 - 24343563
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||||||| ||| ||| ||||||||||||| |||||||||    
T  24343514 ataataatttgagaaaattacataattcagtgtaattataggtgtcgtgt 24343563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 22440651 - 22440603
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||| |||||    
T  22440651 taataatttgagaaaatcacataattcagtgtaattatatgtgacgtgt 22440603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 28964299 - 28964212
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    ||||||||||| ||||| ||| ||| ||||||||||| | ||||| |||| |||||| ||| ||||||||||||| | |||||||||||    
T  28964299 taataatttgaaaaaatcacataattcagtgtaattacaagtgtctgtgtcggacac-gacacatatccgacactgggacacgcctaat 28964212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 21945511 - 21945617
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaatttaaggagtat 101  Q
    ||||||||||| ||||||||| ||| ||||||||||| | ||||| |||| ||||| |||| ||| ||||||||   ||||||||||||   |||||| |    
T  21945511 taataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggaca-tgacacatgtccgacaccgcaacacgcctaatccgaggagtgt 21945609  T
Q  102 ctatgctt 109  Q
    ||||||||    
T  21945610 ctatgctt 21945617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 36635332 - 36635375
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||    
T  36635332 taataatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 32910558 - 32910596
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattat 40  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  32910558 ataataatttgagaaaatgacataattcagtgtaattat 32910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 903930 - 903971
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgt 44  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||    
T  903930 taataatttgagaaaatcacataattcagtgtaattatatgt 903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 5775409 - 5775364
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  5775409 taataatttgagaaaatcacataattaagtgtaattatatgtgtcg 5775364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 18513293 - 18513248
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    |||||||||||||||||||||| ||| || |||||| |||||||||    
T  18513293 ataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18513248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 19230361 - 19230312
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||||||| ||| ||| || |||||||||| |||||||||    
T  19230361 ataataatttgagaaaataacataattcaatgtaattataggtgtcgtgt 19230312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 20743330 - 20743281
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||||||||||| ||| ||||||||| ||| |||| ||||    
T  20743330 ataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgt 20743281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 31243600 - 31243555
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    |||||||||||||||||||||| ||| ||||||||| ||| |||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtc 31243555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 40613458 - 40613503
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||| ||||||||||| ||| ||| ||||||||||||||||||||    
T  40613458 taatattttgagaaaatcacataattcagtgtaattatatgtgtcg 40613503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 24205093 - 24205004
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacgcatatccgacactagaacacgcctaatt 91  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| | |||||||| || ||||||||||||    
T  24205093 ataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacaccaggacacgcctaatt 24205004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26665142 - 26665240
Alignment:
Q  1 aataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacgcatatccgacactagaacacgcctaatttaaggagt 99  Q
    ||||||||||||||||||||||   || || |||||||||| | ||||||| |||||| || || | |||||||| ||||||| ||||||| |||||||    
T  26665142 aataataatttgagaaaatgacgtgattcactgtaattataggcgtcgtgtcggacaccgaagcgtgtccgacaccagaacacccctaattcaaggagt 26665240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 20691326 - 20691372
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  20691326 ataataatttgagaaaatgacataattcagtgtaatcatatgtgtcg 20691372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 2941576 - 2941611
Alignment:
Q  13 agaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||| ||||||||||||||||||||||||||||    
T  2941576 agaaaatcacaaaatacagtgtaattatatgtgtcg 2941611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 16192801 - 16192758
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||    
T  16192801 taataatttgagaaaataacataattcagtgtaattatatgtgt 16192758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41319363 - 41319313
Alignment:
Q  1 aataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    ||||||||||||| ||||||||| ||| || ||||||| ||||||||||||    
T  41319363 aataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcgtgt 41319313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 3730217 - 3730168
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||| ||||||| ||| ||||||||| ||| |||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgt 3730168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 7928458 - 7928503
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||| ||||| ||| ||| ||||||||||||||||||||    
T  7928458 taataatttgaaaaaatcacataattcagtgtaattatatgtgtcg 7928503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 8039886 - 8039841
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| | | ||| ||||||||||||||||||||    
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcg 8039841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 25093510 - 25093555
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||| |||||||||||| ||| ||| ||||||||||||||||||||    
T  25093510 taatgatttgagaaaatcacacaattcagtgtaattatatgtgtcg 25093555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 28576724 - 28576769
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||||||||||||||||||  | |||||||| ||||||||    
T  28576724 taataatttgagaaaatgacaaaattgaatgtaattacatgtgtcg 28576769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 25365469 - 25365525
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacac 58  Q
    ||||||||||||||| |||||| ||| | ||||||| ||| ||||||||| ||||||    
T  25365469 ataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcggacac 25365525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 32804591 - 32804547
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||||| ||| |||  ||||||||||||||||||    
T  32804591 taataatttgagaaaatcacataatttagtgtaattatatgtgtc 32804547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 34307831 - 34307783
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    ||||||||||||||||| ||| | | ||||||||||||| |||||||||    
T  34307831 taataatttgagaaaatcacatatttcagtgtaattataagtgtcgtgt 34307783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 49505205 - 49505161
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||||| ||| |||  ||||||||||||||||||    
T  49505205 taataatttgagaaaatcacataatttagtgtaattatatgtgtc 49505161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 7997218 - 7997129
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacgcatatccgacactagaacacgcctaatt 91  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||| | |||||||  || |||| |||||||    
T  7997218 ataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacatcaggacacacctaatt 7997129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 18586340 - 18586252
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacgcatatccgacactagaacacgcctaatt 91  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||||||  || |||||||||| |||||| || |||||| |||||||    
T  18586340 ataataatttga-aaaatgacataatacagtgtaattataggtgtcgtgtccgagactgacgcatgtccgactctggaacacacctaatt 18586252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 3966511 - 3966556
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  3966511 taataatttgagaaaatcacacaattcagtgtaattatatgtgtcg 3966556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 25863211 - 25863260
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||||||||| | ||| ||||||||||||| |||||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgt 25863260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 28588725 - 28588638
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    ||||||||||||||||| ||| ||| ||||||||||||| ||||| |||| |||||| ||| |||||| ||||| || |||||| ||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacac-gacacatatctgacaccaggacacgcttaat 28588638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 30502439 - 30502352
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||||| |||| |||||| ||| ||| ||||||||| | ||| |||||||    
T  30502439 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacac-gacacatgtccgacactgggacatgcctaat 30502352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 30542782 - 30542695
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||||| |||| |||||| ||| ||| ||||||||| | ||| |||||||    
T  30542782 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacac-gacacatgtccgacactgggacatgcctaat 30542695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 31264446 - 31264494
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    ||||||||||||||||||||| ||| ||||||||| ||| |||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 31264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 6401516 - 6401551
Alignment:
Q  13 agaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||| ||||||||||||||||||||||||||||    
T  6401516 agaaaatcacaaaatacagtgtaattatatgtgtcg 6401551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 6471940 - 6471897
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||    
T  6471940 taataatttgagaaaatcacataattcagtgtaattatatgtgt 6471897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 18421890 - 18421847
Alignment:
Q  5 ataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  18421890 ataatttgagaaaatcacataatccagtgtaattatatgtgtcg 18421847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31695448 - 31695398
Alignment:
Q  1 aataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    ||||||||||||||||||| |||| ||||| |||||| |||||||| ||||    
T  31695448 aataataatttgagaaaataacaacatacaatgtaatcatatgtgtagtgt 31695398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 5468030 - 5467981
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||| ||||| ||| ||| ||||||||||||| |||||||||    
T  5468030 ataataatttgataaaatcacataattcagtgtaattataggtgtcgtgt 5467981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 26205805 - 26205760
Alignment:
Q  9 tttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttgg 54  Q
    ||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  26205805 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgttgg 26205760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 36838551 - 36838596
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  36838551 taataatttgagaaaattacataatttagtgtaattatatgtgtcg 36838596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 41091308 - 41091263
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||| |||||||||||| ||| ||| ||||||||||||||||||||    
T  41091308 taatgatttgagaaaatcacataattcagtgtaattatatgtgtcg 41091263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 38749615 - 38749571
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    |||||||||||| ||||||||| ||| || |||||||||||||||    
T  38749615 ataataatttgaaaaaatgacataattcaatgtaattatatgtgt 38749571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 22794130 - 22794059
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacgcatatccgac 73  Q
    |||||||||||| ||||||||| ||||||||||||||||| |||||||||  ||||||||||||| ||||||    
T  22794130 ataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtccgacactgacgcatgtccgac 22794059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 1864931 - 1864875
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacac 58  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||    
T  1864931 taataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgttggacac 1864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 7918262 - 7918218
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||    
T  7918262 taataatttgagaaaatcacataattcagtgtaattatatgtgtc 7918218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 30847771 - 30847683
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    ||||||||||| ||||||||| ||| || |||||| ||||||||| |||||| |||| || |  | |||||||||||||||| ||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgttgaacaccgatgtgtgtccgacactagaacacacctaat 30847683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 40747825 - 40747773
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttgg 54  Q
    |||||||||||||||||||||| ||| || |||||||||| ||||| ||||||    
T  40747825 ataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttgg 40747773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 12443511 - 12443456
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacac 58  Q
    ||||||||||||||||| ||| ||| |||||||||| |||||| ||||| ||||||    
T  12443511 taataatttgagaaaatcacataattcagtgtaattgtatgtgacgtgtcggacac 12443456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 25934634 - 25934669
Alignment:
Q  13 agaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||| ||||||||||||||||||||||||||||    
T  25934634 agaaaatcacaaaatacagtgtaattatatgtgtcg 25934669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 44482240 - 44482283
Alignment:
Q  5 ataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgtcg 44482283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 25361896 - 25361938
Alignment:
Q  5 ataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||| ||| ||| |||||||||||||||||||    
T  25361896 ataatttgagaaaatcacataattcagtgtaattatatgtgtc 25361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 25098604 - 25098563
Alignment:
Q  5 ataatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||    
T  25098604 ataatttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 36878469 - 36878514
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| ||||||||||||| ||||||    
T  36878469 taataatttgagaaaatcacataattcagtgtaattataggtgtcg 36878514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 40181879 - 40181920
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgt 44  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||    
T  40181879 taataatttgagaaaatcacataattcagtgtaattatatgt 40181920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 10233261 - 10233305
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    |||||| |||||||||| ||| ||| |||||||||||||||||||    
T  10233261 taataaattgagaaaatcacataattcagtgtaattatatgtgtc 10233305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 19324572 - 19324612
Alignment:
Q  5 ataatttgagaaaatgacaaaatacagtgtaattatatgtg 45  Q
    ||||||||||||||| ||| ||| |||||||||||||||||    
T  19324572 ataatttgagaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 34712434 - 34712390
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||||| ||| |||  ||||||||||||||||||    
T  34712434 taataatttgagaaaataacataatttagtgtaattatatgtgtc 34712390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 42325567 - 42325611
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    |||||||||||||||||||||| ||| ||||||||  ||||||||    
T  42325567 ataataatttgagaaaatgacataattcagtgtaacaatatgtgt 42325611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 44067523 - 44067572
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  44067523 ataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgt 44067572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 34897093 - 34897138
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  34897093 taataatttgagaaaatcacataattcagtgtaattatatgtgtcg 34897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 39820436 - 39820509
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacgcatatccgacac 75  Q
    |||||||||||||||||||| | |||  |||||||| ||| ||||||||| |||||| ||||| | ||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacgcgtgtccgacac 39820509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 35431192 - 35431104
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    |||||||||||||||||||||| | |  |||||||| ||| ||||||||| |||||  || |||||||| |||| || |||| ||||||    
T  35431192 ataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcggacatcgatgcatatccaacaccaggacacccctaat 35431104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 7658471 - 7658530
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactga 61  Q
    ||||||||||||||||| ||| ||| |||||||||||||| |||| |||||||| |||||    
T  7658471 taataatttgagaaaattacataattcagtgtaattatatttgtcggtgttggatactga 7658530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34201099 - 34201056
Alignment:
Q  1 aataataatttgagaaaatgacaaaatacagtgtaattatatgt 44  Q
    ||||||||||||||||||||||| ||| || |||||||||||||    
T  34201099 aataataatttgagaaaatgacataattcaatgtaattatatgt 34201056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 33382071 - 33382025
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||| ||||||||||| ||| ||| ||||||||||||||||    
T  33382071 ataataatttaagaaaatgacataattcagagtaattatatgtgtcg 33382025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 43737851 - 43737817
Alignment:
Q  14 gaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||| ||||||||||||||||||||||||||||    
T  43737851 gaaaatcacaaaatacagtgtaattatatgtgtcg 43737817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 4611542 - 4611583
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgt 44  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||    
T  4611542 taataatttgagaaaataacataattcagtgtaattatatgt 4611583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 4786389 - 4786344
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  4786389 taataatttaagaaaatcacataattcagtgtaattatatgtgtcg 4786344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 11927137 - 11927092
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||| ||||| ||| ||| ||||||||||||||||||||    
T  11927137 taataatttgataaaatcacataattcagtgtaattatatgtgtcg 11927092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 13203649 - 13203698
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgtt 52  Q
    ||||||||||||||||| ||| ||| ||||||||||||||  ||||||||    
T  13203649 taataatttgagaaaattacataattcagtgtaattatatacgtcgtgtt 13203698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 13844647 - 13844602
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  13844647 taataatttgagaaaatcacataattgagtgtaattatatgtgtcg 13844602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 14134707 - 14134752
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| |||||||||||||| |||||    
T  14134707 taataatttgagaaaatcacataattcagtgtaattatatatgtcg 14134752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 31236628 - 31236583
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| || |||||||||||||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 31236583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3025559 - 3025603
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||||| ||| ||| ||||||||||||| |||||    
T  3025559 taataatttgagaaaatcacataattcagtgtaattataggtgtc 3025603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 24362253 - 24362209
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||| ||| ||| ||| |||||||||||||||||||    
T  24362253 taataatttgagagaatcacataattcagtgtaattatatgtgtc 24362209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 43250000 - 43250049
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  43250000 ataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgt 43250049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12278842 - 12278898
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacac 58  Q
    |||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  12278842 ataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcggacac 12278898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 21880160 - 21880247
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    ||||||||||||||||| ||| ||| ||||||||||| | ||||| |||| |||||| ||| ||| |||||||| || |||||||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacac-gacacatgtccgacaccaggacacgcctaat 21880247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 9482944 - 9482987
Alignment:
Q  5 ataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  9482944 ataatttgagaaaatcacacaattcagtgtaattatatgtgtcg 9482987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 18233646 - 18233604
Alignment:
Q  6 taatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||    
T  18233646 taatttgagaaaatgacataattcagtgtaattataggtgtcg 18233604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 38134458 - 38134412
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||||||||||||||| ||| || |||||| ||||||||||    
T  38134458 ataataatttgagaaaatgacataattcaatgtaatcatatgtgtcg 38134412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 5835255 - 5835300
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||| ||||||||||| ||| ||| ||||||||||||||||||||    
T  5835255 taatagtttgagaaaataacataattcagtgtaattatatgtgtcg 5835300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 7328742 - 7328697
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  7328742 taataatttgagaaaataacataatttagtgtaattatatgtgtcg 7328697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 20549799 - 20549844
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  20549799 taataatttgagaaaatcacgtaattcagtgtaattatatgtgtcg 20549844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 26329433 - 26329388
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||  ||| ||| ||||||||||||||||||||    
T  26329433 taataatttgagaaaaacacacaattcagtgtaattatatgtgtcg 26329388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 27732290 - 27732245
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  27732290 taataatttaagaaaattacataattcagtgtaattatatgtgtcg 27732245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 10230125 - 10230073
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttgg 54  Q
    ||||||||||||| |||||||| ||| |||||||| ||||  |||||||||||    
T  10230125 ataataatttgaggaaatgacataattcagtgtaagtatagatgtcgtgttgg 10230073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 17307904 - 17307944
Alignment:
Q  6 taatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    |||||||||||||| ||| ||| ||||||||||||||||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgt 17307944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 17851439 - 17851483
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||| ||||||| ||| ||| |||||||||||||||||||    
T  17851439 taataattttagaaaatcacataattcagtgtaattatatgtgtc 17851483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 19930991 - 19930947
Alignment:
Q  4 aataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||    
T  19930991 aataatttgataaaatgacataattcaatgtaattatatgtgtcg 19930947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 22602756 - 22602716
Alignment:
Q  8 atttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||||| ||| ||| ||||||||||||||||||||    
T  22602756 atttgagaaaatcacataattcagtgtaattatatgtgtcg 22602716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 22868050 - 22868094
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  22868050 taataatatgagaaaatcacataattcagtgtaattatatgtgtc 22868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 26733312 - 26733399
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    ||||||||||| ||||| ||| ||| |||| |||||| ||||||| |||| |||||| ||||||| ||||| ||  |||||||||||||    
T  26733312 taataatttgacaaaatcacataattcagtctaattaaatgtgtcggtgtcggacac-gacgcatgtccgatacgggaacacgcctaat 26733399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 32308128 - 32308172
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||||| ||| ||| |||||||||| ||||||||    
T  32308128 taataatttgagaaaatcacataattcagtgtaattgtatgtgtc 32308172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 38804607 - 38804555
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttgg 54  Q
    |||||||||| ||||||||||| ||| ||| ||||| ||| ||||||||||||    
T  38804607 ataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttgg 38804555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 225320 - 225268
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttgg 54  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  225320 ataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgttgg 225268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 10535811 - 10535759
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttgg 54  Q
    |||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  10535811 ataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgttgg 10535759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 18570979 - 18571067
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    |||||||||||||||||||||| ||| || |||||| ||||||||| |||| | |||| ||  |||||||||||| || |||||||||||    
T  18570979 ataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgaacac-gatacatatccgacaccaggacacgcctaat 18571067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 5367200 - 5367287
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc-gtgttggacactgacgcatatccgacactagaacacgcctaat 90  Q
    |||||||||||| |||| ||| ||| ||||||||||||||||||| |||| |||||| ||| |||||||||| |  | |||||||||||    
T  5367200 taataatttgaggaaatcacataattcagtgtaattatatgtgtcggtgtcggacac-gacacatatccgactccgggacacgcctaat 5367287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 35449521 - 35449565
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||    
T  35449521 taataatttgagaaaatcacagaattcagtgtaattatatgtgtc 35449565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 21616770 - 21616813
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||    
T  21616770 taataatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 37411295 - 37411210
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg-tgttggacactgacgcatatccgacactagaacacgccta 88  Q
    ||||||||||||||||| ||| ||| |||||| ||||||||||||| ||| | |||| ||||| | ||||||||| | |||||||||    
T  37411295 taataatttgagaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacac-gacgcgtgtccgacactgggacacgccta 37411210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 12668474 - 12668429
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||||    
T  12668474 taataatttgaaaaaatgacataattcagtgtaattataagtgtcg 12668429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 23718034 - 23718079
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||| | ||| ||| ||||||||||||||||||||    
T  23718034 taataatttgagaaagtcacataattcagtgtaattatatgtgtcg 23718079  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 24105706 - 24105751
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||| | ||| ||| ||||||||||||||||||||    
T  24105706 taataatttgagaaagtcacataattcagtgtaattatatgtgtcg 24105751  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 25544488 - 25544537
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||||||||| | ||| ||||||||| ||| |||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgt 25544537  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 44860328 - 44860373
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||||||||||  || ||| ||||||||||||||||||||    
T  44860328 taataatttgagaaaatcgcataattcagtgtaattatatgtgtcg 44860373  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12748691 - 12748747
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacac 58  Q
    |||||||||||||||||||||| | | ||||||||| ||| |||| |||| ||||||    
T  12748691 ataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcggacac 12748747  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 7265644 - 7265599
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  7265644 taataatttgagaaaatcacataattcagtgtaattatatgtgtcg 7265599  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 9025545 - 9025500
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  9025545 taataatttgagaaaatcacataattcagtgtaattatatgtgtcg 9025500  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 9195805 - 9195760
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||    
T  9195805 taataatttgagaaaatgacataatttagtgtaattatatgtgtcg 9195760  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 34446572 - 34446621
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    |||||||||||||||||||||| ||| ||||||||| ||| |||||||||    
T  34446572 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgt 34446621  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 19040360 - 19040404
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtc 47  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||    
T  19040360 taataatttgagaaaatcacataattcagtgtaattatatgtgtc 19040404  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 7086803 - 7086848
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| |||  |||||||||||||||||||    
T  7086803 taataatttgagaaaatcacataatttagtgtaattatatgtgtcg 7086848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 9617442 - 9617487
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| || |||||||||||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 9617487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 11591917 - 11591876
Alignment:
Q  7 aatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||    
T  11591917 aatttgagaaaatcacataattcagtgtaattatatgtgtcg 11591876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 12235571 - 12235522
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgt 51  Q
    ||||||||| |||||||||||| ||| ||||||||| ||| |||||||||    
T  12235571 ataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgt 12235522  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 13689245 - 13689184
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgtcgtgttggacactgacg 63  Q
    |||||||||||||||||| ||||| | || |||||| ||| || |||||| |||||||||||    
T  13689245 ataataatttgagaaaataacaaatttcaatgtaatcataggtatcgtgtcggacactgacg 13689184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 13851744 - 13851789
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  13851744 taataatttgagaaaataacgtaattcagtgtaattatatgtgtcg 13851789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 26562701 - 26562742
Alignment:
Q  7 aatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgtcg 26562742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 30866195 - 30866150
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| || |||||||||||||||||    
T  30866195 taataatttgagaaaatcacataattcaatgtaattatatgtgtcg 30866150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 7569220 - 7569176
Alignment:
Q  2 ataataatttgagaaaatgacaaaatacagtgtaattatatgtgt 46  Q
    |||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  7569220 ataataatttgagaaaattacataattcagtgtaattataggtgt 7569176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 9629392 - 9629436
Alignment:
Q  4 aataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||||||||| ||| ||| || |||||||||||||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcg 9629436  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 44572 - 44531
Alignment:
Q  7 aatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||    
T  44572 aatttgagaaaatcacataattcagtgtaattatatgtgtcg 44531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 9798 - 9753
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  9798 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcg 9753  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 135363 - 135318
Alignment:
Q  3 taataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    ||||||||||||||||| ||| ||| | ||||||||||||||||||    
T  135363 taataatttgagaaaatcacataattctgtgtaattatatgtgtcg 135318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 53189 - 53233
Alignment:
Q  4 aataatttgagaaaatgacaaaatacagtgtaattatatgtgtcg 48  Q
    |||||||||||||||| ||| ||| ||||||||||||| ||||||    
T  53189 aataatttgagaaaatcacataattcagtgtaattataagtgtcg 53233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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