View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_6 (Length: 497)
Name: NF18958_low_6
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 9086404 - 9086885
Alignment:
| Q |
1 |
acttcagtgacgaactctttcccgtctccctgtgtattgttgagaattttcacagccaccagaatatcgcttgagagttttcccttaaacactgttccgt |
100 |
Q |
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|||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
9086404 |
acttcagtgatgaactctttaccttctccctgtgtattgttgagaattttcacagccaccagaatatcactagagagttttcccttaaacactgttccgt |
9086503 |
T |
|
| Q |
101 |
gagctccttctccaagtttctccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9086504 |
gagctccttctccaagtttctccttaaacccacctgtgattgtttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaa |
9086603 |
T |
|
| Q |
201 |
cttatcaattctaacttgatcttccttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaacctgcaata |
300 |
Q |
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| T |
9086604 |
cttatcaattctaacttgatcttctttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaccctgcaata |
9086703 |
T |
|
| Q |
301 |
tcatattaaaagttagaattttcttcccaacaaaaagagataaacagaacattaagaaacaaaaattagtttcttaatttcgtctcatcttaccggtact |
400 |
Q |
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| T |
9086704 |
tcatattaaaagttagaattttcttcccaacaaaaacagataaacagaacattaagaaacaaaaagtagtttcttagtttcgtctcatcttaccggtact |
9086803 |
T |
|
| Q |
401 |
agcaaaaataagagagcttggaatatagatagttttctgtattcttttgcgtttaaaacattcaatgtcacgtttggagctg |
482 |
Q |
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| T |
9086804 |
agcaaaaataagagagtttggaatatagatagttttccgtattcttttgcggttaaaacattcaatgtcacgtttggagctg |
9086885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 9125585 - 9125872
Alignment:
| Q |
13 |
aactctttcccgtctccctgtgtattgttgagaattttcacagccaccagaatatcgcttgagagttttcccttaaacactgttccgtgagctccttctc |
112 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||||||| |||||||| |||||||||| |
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| T |
9125585 |
aactctatcccttctccctgtgtattgttgagaatcttcacagccaccagaatctcactagagagttttcctttaaacacggttccgtgtgctccttctc |
9125684 |
T |
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| Q |
113 |
caagtttctccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattct |
212 |
Q |
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| T |
9125685 |
ctaacttttccttaaacccactagtgattctttttatatcagaatatgaaaatctggcaggcttttgtgctctataatcctctaaaaacctatcaactct |
9125784 |
T |
|
| Q |
213 |
aacttgatcttccttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaacctgcaata |
300 |
Q |
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| T |
9125785 |
aacttgatcttcttctttttctctgaaatgtagataaatctttataaatgcaatggtgagcaaccccaataaaattgaacctgcaata |
9125872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 9070105 - 9070401
Alignment:
| Q |
1 |
acttcagtgacgaactctttcccgtctccctgtgtattgttgagaattttcacagccaccagaatatcgcttgagagttttcccttaaacactgttccgt |
100 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || || ||||||||||| ||||| || | ||||| |
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| T |
9070105 |
acttcagtgatgaactctttcccttctccttgtgtattgttgagaatcttcacagccactagaatctcactagagagttttcctttaaataccgatccgt |
9070204 |
T |
|
| Q |
101 |
gagctccttctccaagtttctccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaa |
200 |
Q |
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||||||||||||| || || |||||||| |||| ||||| ||||||||||||| || |||||||| ||||||||||| |||||| |||| |||||||| |
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| T |
9070205 |
gagctccttctcctagcttttccttaaatccactcgtgatcctttttatatcagagtatgaaaatctggcaggcttttgggctctataatcctctaaaaa |
9070304 |
T |
|
| Q |
201 |
cttatcaattctaacttgatcttccttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaacctgca |
297 |
Q |
| |
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|||||||||||||||||||||||| | |||| | || ||||| ||||||||||| ||| | ||||| || ||| ||||||||||||||||||||| |
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| T |
9070305 |
cttatcaattctaacttgatcttcttctttttctctgaaatgcagataaatcttaataaatacaatggtgcccattcccaatataattgaacctgca |
9070401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 8979406 - 8979689
Alignment:
| Q |
12 |
gaactctttcccgtctccctgtgtattgttgagaattttcacagccaccagaatatcgcttgagagttttcccttaaacactgttccgtgagctccttct |
111 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||||||| |||||||| || ||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
8979406 |
gaactctttcccgtctccttctgtattgttgagaatcttcacagcaaccagaatctcatttgagagttttcctttaaatacttttccgtgagctccttct |
8979505 |
T |
|
| Q |
112 |
ccaagtttctccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattc |
211 |
Q |
| |
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|| ||||| |||||||||||| |||||||||||||||||||||| | |||||||||| ||| | |||||||||| |||| ||||||||||| |||| || |
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| T |
8979506 |
cctagtttttccttaaacccatttgtgattctttttatatcagcaaaagaaaatctagtaggttgttgtgctctataatcctctaaaaacttgtcaactc |
8979605 |
T |
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| Q |
212 |
taacttgatcttccttttttcccctaaaatgtagataaatctttgtaattgcaatgatgaccaaccccaatataattgaacctg |
295 |
Q |
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||||||||||||| | |||| ||||||| || ||| ||||| ||| | |||| | ||||||||||| | ||||||||||| |
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| T |
8979606 |
taacttgatcttcttctttttttctaaaatataaatagatcttaataaatataatggtaaccaaccccaaaacaattgaacctg |
8979689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8861995 - 8862215
Alignment:
| Q |
1 |
acttcagtgacgaactctttcccgtctccctgtgtattgttgagaattttcacagccaccagaatatcgcttgagagttttcccttaaacactgttccgt |
100 |
Q |
| |
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|||||| ||| |||||||||||| ||||||| |||| ||||| |||||||| ||||| |||| || || ||||| ||||| |||||||| ||||||| |
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| T |
8861995 |
acttcattgatgaactctttcccttctccctctgtaccattgaggattttcaccgccacatgaatctcactcgagagctttcctttaaacacagttccgt |
8862094 |
T |
|
| Q |
101 |
gagctccttctccaagtttctccttaaacccacctgtgattctttttatatcagcataggaaaatctagcaggcttttgtgctctaaaatcatctaaaaa |
200 |
Q |
| |
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||||||||||||| || || ||||| ||||| ||| |||||||||||||| ||||| |||||||||| ||| |||||||||| | |||| |||||||| |
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| T |
8862095 |
gagctccttctcctagcttttccttgaacccgtttgtaattctttttatatcggcataagaaaatctagtaggtttttgtgctcgataatcctctaaaaa |
8862194 |
T |
|
| Q |
201 |
cttatcaattctaacttgatc |
221 |
Q |
| |
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| T |
8862195 |
cttatcaactctaatttgatc |
8862215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 8866030 - 8866090
Alignment:
| Q |
161 |
aaaatctagcaggcttttgtgctctaaaatcatctaaaaacttatcaattctaacttgatc |
221 |
Q |
| |
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||||||||| ||| ||||| |||| | |||| |||||||||||||||| ||||| |||||| |
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| T |
8866030 |
aaaatctagtaggtttttgagctcgataatcctctaaaaacttatcaactctaatttgatc |
8866090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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