View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18958_low_7 (Length: 484)

Name: NF18958_low_7
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18958_low_7
NF18958_low_7
[»] chr3 (1 HSPs)
chr3 (18-484)||(54293067-54293532)
[»] chr6 (6 HSPs)
chr6 (418-484)||(19123501-19123567)
chr6 (218-276)||(8434274-8434332)
chr6 (231-276)||(8433868-8433913)
chr6 (213-276)||(8434061-8434124)
chr6 (213-288)||(25374026-25374101)
chr6 (177-261)||(18288560-18288644)
[»] chr5 (2 HSPs)
chr5 (418-484)||(36753167-36753233)
chr5 (177-274)||(19630000-19630096)
[»] chr1 (2 HSPs)
chr1 (217-272)||(33856620-33856675)
chr1 (217-272)||(33924248-33924303)
[»] chr8 (1 HSPs)
chr8 (208-262)||(9695526-9695580)
[»] chr2 (2 HSPs)
chr2 (208-276)||(12224786-12224854)
chr2 (171-286)||(13165835-13165951)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Complemental strand, 54293532 - 54293067
Alignment:
Q  18 aagagaatctgtagtggctgcaaaaatctctgtgtcatggcttgctttgcctgtgaaaaggtcagtttagttaaagattttttacactgtcaatcaattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54293532 aagagaatctgtagtggctgcaaaaatctctgtgtcatggcttgctttgcctgtgaaaaggtcagtttagttaaagattttttacactgtcaatcaattg 54293433  T
Q  118 taattctcgtannnnnnnaagagaaaacagaagatgcgttgacgacgtaaaatagagttaaataattttacactgacatccaataaacttttgtgttccg 217  Q
    |||||||||||       |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  54293432 taattctcgtatttttt-aagagaaaacagaagatgcgttgacgacgtaaaatag--ttaaataattttacactgacatccaataaacttttgtgttccg 54293336  T
Q  218 ccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggtttcttagcggatgacag--taaaactcaatttatcactgttaaatat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  54293335 ccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggtttcttagcggatgacagagtaaaactcaatttatcactgttaaatat 54293236  T
Q  316 acattatgatcggttgtgannnnnnngactgtgtaaaacttttatgctgtgagtgtattgaaattaaactaattccataatttgaaatgtgaatttcggt 415  Q
    |||||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54293235 acattatgatcggttgtgatttttttgactgtgtaaaacttttatgctgtgggtgtattgaaattaaactaattccataatttgaaatgtgaatttcggt 54293136  T
Q  416 gcagaataatatgactttgtgtgcgaggtgttttattcgtggaaattatcgaattggtatgagtaatac 484  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54293135 gcagaataatatgacgttgtgtgcgaggtgttttattcgtggaaattatcgaattggtatgagtaatac 54293067  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 484
Target Start/End: Original strand, 19123501 - 19123567
Alignment:
Q  418 agaataatatgactttgtgtgcgaggtgttttattcgtggaaattatcgaattggtatgagtaatac 484  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  19123501 agaataatatgacgttgtgtgtgaggtgttttatttgtggaaactatcgaattggtatgagtaatac 19123567  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 8434274 - 8434332
Alignment:
Q  218 ccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggtttctta 276  Q
    |||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  8434274 ccaaatcacaaaaatattttaaaattagttgtatgacatagcagattgatggtttctta 8434332  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 8433868 - 8433913
Alignment:
Q  231 atattttaaaattagttgcatgacatggcaggttgatggtttctta 276  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||    
T  8433868 atattttaaaattagttgtatgacatggcagattgatggtttctta 8433913  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 8434061 - 8434124
Alignment:
Q  213 ttccgccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggtttctta 276  Q
    |||| |||||||| ||| || |||||| |||||||| |||||||||||| ||||||||||||||    
T  8434061 ttccaccaaatcataaagattttttaatattagttgtatgacatggcagattgatggtttctta 8434124  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 25374101 - 25374026
Alignment:
Q  213 ttccgccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggtttcttagcggatgacagt 288  Q
    ||||||||||||| ||| ||| ||| ||| |||||| |||| || |||| |||||||||||||| |||||||||||    
T  25374101 ttccgccaaatcacaaagatagtttgaaaatagttgtatgaaatagcagattgatggtttcttaacggatgacagt 25374026  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 18288560 - 18288644
Alignment:
Q  177 aaataattttacactgacatccaataaacttttgtgttccgccaaatcagaaaaatattttaaaattagttgcatgacatggcag 261  Q
    ||||| ||||||||||||||||||||||||||  |  ||| ||| |||| |||| ||||| ||||||||||| || |||| ||||    
T  18288560 aaatagttttacactgacatccaataaactttaatactccaccatatcacaaaactatttcaaaattagttgtataacatagcag 18288644  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 484
Target Start/End: Original strand, 36753167 - 36753233
Alignment:
Q  418 agaataatatgactttgtgtgcgaggtgttttattcgtggaaattatcgaattggtatgagtaatac 484  Q
    ||||||||| ||  ||||||||||||||||| |||||||| || |||||||||||||||||||||||    
T  36753167 agaataataggaagttgtgtgcgaggtgtttcattcgtgggaactatcgaattggtatgagtaatac 36753233  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 19630000 - 19630096
Alignment:
Q  177 aaataattttacactgacatccaataaac-ttttgtgttccgccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggtttct 274  Q
    ||||| |||||||||| |||||||||||| | |||| ||||||||||||| ||| ||||||| | |||||||| ||||||| |||| ||||||||||||    
T  19630000 aaatagttttacactgccatccaataaacatcttgtattccgccaaatca-aaagatattttgacattagttgtatgacat-gcagattgatggtttct 19630096  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 33856620 - 33856675
Alignment:
Q  217 gccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggttt 272  Q
    ||||||||| ||| |||||||||||||||||| ||||||  |||| ||||||||||    
T  33856620 gccaaatcacaaagatattttaaaattagttgtatgacaatgcagattgatggttt 33856675  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 33924303 - 33924248
Alignment:
Q  217 gccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggttt 272  Q
    ||||||||| ||| |||||||||||||||||| ||||||  |||| ||||||||||    
T  33924303 gccaaatcacaaagatattttaaaattagttgtatgacaatgcagattgatggttt 33924248  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 9695526 - 9695580
Alignment:
Q  208 ttgtgttccgccaaatcagaaaaatattttaaaattagttgcatgacatggcagg 262  Q
    |||| ||||||||||||||| | ||||||| |||||||||| |||||||| ||||    
T  9695526 ttgtattccgccaaatcagagatatattttgaaattagttgtatgacatgacagg 9695580  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 12224786 - 12224854
Alignment:
Q  208 ttgtgttccgccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatggtttctta 276  Q
    |||| |||| |||||||| ||  |||||||||||||||||| |||||||  ||| ||||| ||||||||    
T  12224786 ttgtattccaccaaatcacaacgatattttaaaattagttgtatgacatatcagattgatagtttctta 12224854  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 13165835 - 13165951
Alignment:
Q  171 agagttaaataattttacactgacatccaataaac-ttttgtgttccgccaaatcagaaaaatattttaaaattagttgcatgacatggcaggttgatgg 269  Q
    ||||| ||||| |||||| |||||||||||| |   |||||| | ||| ||||||| | | ||||||| |||||||||| ||||||||||||   |||||    
T  13165835 agagtaaaatagttttacgctgacatccaatgagtattttgtatcccgtcaaatcacagagatattttgaaattagttgtatgacatggcagaccgatgg 13165934  T
Q  270 tttcttagcggatgaca 286  Q
    ||| |||  ||||||||    
T  13165935 ttttttattggatgaca 13165951  T

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