View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18958_low_9 (Length: 473)
Name: NF18958_low_9
Description: NF18958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18958_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 27349141 - 27348686
Alignment:
| Q |
1 |
agcaatggatacagtgtgacaagtgctcagaatggagaaagttggaatctgtggagaatttatggggtcaaagaaggtaaacataaaaagactttatatt |
100 |
Q |
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| T |
27349141 |
agcaatggatacagtgtgacaagtgctcagaatggagaaagttggaatctgtggagaatttatggggtcaaagaaggtaaacataaaa-gactttatatt |
27349043 |
T |
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| Q |
101 |
tctggtgcaatgcaattgttaaatcttgannnnnnn-gcaagtttttaagcttttggatgctgtcatcaggtgttcatgttctgctcccatgaattgaac |
199 |
Q |
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| T |
27349042 |
tctggtgcaatgcaattgttaaatcttgattttttttgcaagtttttaagcttttggatgctgtcatcaggtgttcatgttctgctcccatgaattgaac |
27348943 |
T |
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| Q |
200 |
ctaaggggaacttggataatcttttgaaaatgaaaaaggtattcatgatgttctttagtcgtagaagaaagttaataaatatcgttttgaaaatctaaag |
299 |
Q |
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| T |
27348942 |
ctaaggggaacttggataatcttttgaaaatgaacaaggtattcatgatgttctttagtcgtagaagaaagttaataaatatcgttttgaaaatctaaag |
27348843 |
T |
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| Q |
300 |
tgacaaataatgtgaaacataaatatttcaattgttatgctgataatgagatatatgaatacttataactaagtgtatcatgaaaattgataatattatt |
399 |
Q |
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| T |
27348842 |
tgacaaataatgtgaaacataaatatttcaattgttataccgataatgagatatatgaatacttataacttagagtatcatgaaaattgataatattatt |
27348743 |
T |
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| Q |
400 |
ttgattggtgtttttcagattctttgaaaccattaaaaagactttgatctatatgat |
456 |
Q |
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| T |
27348742 |
ttgattggtgtttttcagattctttgaaaccattaaaaagactttgatctatatgat |
27348686 |
T |
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