View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18959_high_1 (Length: 895)
Name: NF18959_high_1
Description: NF18959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18959_high_1 |
 | |
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| [»] scaffold0103 (2 HSPs) |
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| [»] scaffold0561 (1 HSPs) |
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| [»] scaffold0226 (2 HSPs) |
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| [»] scaffold0359 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 282 - 878
Target Start/End: Original strand, 13485944 - 13486543
Alignment:
| Q |
282 |
ggttcaacatgcaataactggagcaataattgaagtttcagtaacatcataannnnnnnatccacataatcaaaatggtttgtgggaacattgaccggta |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
13485944 |
ggttcaacatgcaataactggagcaataattgaagtttcagtaacatcataatttttttatccacataatcaaaatggtttgtgggaacattggccggta |
13486043 |
T |
|
| Q |
382 |
cggatgaagcat----agaacttacattttccgtagttttcaaaatggcaatgattttccttatttctcgtgcatctttagatatagtaaatagaaagta |
477 |
Q |
| |
|
|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
13486044 |
cggatgaagcatcaagagaacttacattttcagtggttttcaaaatggcaatgattttccatatttcttgtgcatctttagatatagtaaatagaaagta |
13486143 |
T |
|
| Q |
478 |
tccatttgcatgcttccacgactgtaatttctataaactctcatacaagcaaaaacctaaagagccccttaatttctcaaactgaacaacatttggcacc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486144 |
tccatttgcatgcttccacgactgtaatttctataaactctcatacaagcaaaaacctaaagagccccttaatttctcaaactgaacaacatttggcacc |
13486243 |
T |
|
| Q |
578 |
ttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataacttaatattcaacatgttccttgatgaaatgatgatgaatgtcaa |
677 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13486244 |
ttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataacttaatattcaacatgttccgtgatgaaatgatgatgaatgtcaa |
13486343 |
T |
|
| Q |
678 |
tgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaagttgttgcagtataatgtcatgacatcttaaggagacattatgat |
777 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486344 |
tgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaagtttttgcagtataatgtcatgacatcttaaggagacattatgat |
13486443 |
T |
|
| Q |
778 |
gaataaggatcaggtggaactcaggatgagcgcaagaagacaactagaggctcccaagatgcctctggttgatgacttgccaaactacatatctttggtt |
877 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486444 |
gaataaggatctggtggaactcgggatgagcgc-agaagacaaccagaggctcccaagatgcctctggttgatgacttgccaaactacatatctttggtt |
13486542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 166 - 288
Target Start/End: Original strand, 13485798 - 13485920
Alignment:
| Q |
166 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcacaaactcaacacattgtttgacagaagttttaaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
13485798 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcataaactcaacacattgtttgacagaggttttaaa |
13485897 |
T |
|
| Q |
266 |
aacaagatcaatattaggttcaa |
288 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
13485898 |
aacaagatcaatattaggttcaa |
13485920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 13485612 - 13485746
Alignment:
| Q |
10 |
gagcacagacacatcaacaacatttccaaaagaaagttcaaagataatatctaattggacatgggatggtccaacatcattaggggcggtttcttttgtt |
109 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
13485612 |
gagcacagacacatcaacaacattttcaaaagaaagttcaaagataatatctaattggacatgggatggtccaaaatcattagcggcggtttcttttgtt |
13485711 |
T |
|
| Q |
110 |
gatttatttggtctcagttgatgtttcagaaacaaga |
146 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
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| T |
13485712 |
gatttatttgg--tcagttgatgtttcagaaacaaga |
13485746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 83; Significance: 8e-39; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 460 - 678
Target Start/End: Complemental strand, 29784 - 29566
Alignment:
| Q |
460 |
tatagtaaatagaaagtatccatttgcatgcttccacgactgtaatttctataaactctcatacaagcaaaaacctaaagagccccttaatttctcaaac |
559 |
Q |
| |
|
||||||||| | ||||||| |||||| |||||||| ||||||||| ||||||| |||||||||| ||| |||||| ||||||||||| |||||||| |
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| T |
29784 |
tatagtaaagaaaaagtatttgtttgcacgcttccacaactgtaattgctataaattctcatacaaataaatacctaacgagccccttaacttctcaaat |
29685 |
T |
|
| Q |
560 |
tgaacaacatttggcaccttagttaaaatatctgcctgttgttgttcatttgctacatactcatggttcataacttaatattcaacatgttccttgatga |
659 |
Q |
| |
|
|| |||||||||| |||||||| ||||||| || ||||||||||| ||| ||| ||||| |||||||||||| | ||||||||||||| |||||| |
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|
| T |
29684 |
tgcacaacatttgaaaccttagtgaaaatatatgttagttgttgttcagttgttacccactcaaggttcataactttaccttcaacatgttccgtgatga |
29585 |
T |
|
| Q |
660 |
aatgatgatgaatgtcaat |
678 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
29584 |
aatgatgacaaatgtcaat |
29566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 166 - 292
Target Start/End: Complemental strand, 36392 - 36266
Alignment:
| Q |
166 |
caacaaaaatatcaagtgtactagatggtttaacaaccttattagagataagatctacttgactcacaaactcaacacattgtttgacagaagttttaaa |
265 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||| ||||| | |||||||||||||| | | |||||||| |||| |||| ||||| ||| |
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| T |
36392 |
caacaaaaatatcaggtgtactagatgttttaacaaccttatcagagacatgatctacttgactcgtataatcaacacagggtttcacaggagtttcaaa |
36293 |
T |
|
| Q |
266 |
aacaagatcaatattaggttcaacatg |
292 |
Q |
| |
|
|||||||| | |||| |||||||||| |
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|
| T |
36292 |
cacaagatcgacattaagttcaacatg |
36266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 654 - 717
Target Start/End: Complemental strand, 22889274 - 22889211
Alignment:
| Q |
654 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaat |
717 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||| ||||| |
|
|
| T |
22889274 |
tgatgaaatgatgtcgaatgtcaatgtgctttgttctgctatgttgaataagattcttggaaat |
22889211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0561 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0561
Description:
Target: scaffold0561; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 654 - 729
Target Start/End: Original strand, 8212 - 8287
Alignment:
| Q |
654 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcact |
729 |
Q |
| |
|
||||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||| ||||| || |||||||| |
|
|
| T |
8212 |
tgatgaaatgatgtcgaatatcaatgtgctttgttctgctatgttgaataggattcttggaaatgttgatagcact |
8287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 654 - 725
Target Start/End: Complemental strand, 15774 - 15703
Alignment:
| Q |
654 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatag |
725 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||| ||||||||||| | ||||| |||||||| |||| |
|
|
| T |
15774 |
tgatgaaatgatgttgaatgacaatgtgctttgttctgctatgttgaatagggttcttggaaatattgatag |
15703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 654 - 725
Target Start/End: Complemental strand, 25168 - 25097
Alignment:
| Q |
654 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatag |
725 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||| ||||||||||| | ||||| |||||||| |||| |
|
|
| T |
25168 |
tgatgaaatgatgttgaatgacaatgtgctttgttctgctatgttgaatagggttcttggaaatattgatag |
25097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 656 - 723
Target Start/End: Original strand, 18590421 - 18590488
Alignment:
| Q |
656 |
atgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaat |
723 |
Q |
| |
|
|||||||||||| |||||||||| ||||| | || |||||||||||||||||||| || |||||||| |
|
|
| T |
18590421 |
atgaaatgatgacgaatgtcaatatgctttttccttctatgttgaatgagattcttggatatattaat |
18590488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0359 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0359
Description:
Target: scaffold0359; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 747
Target Start/End: Original strand, 3818 - 3911
Alignment:
| Q |
654 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaagttgttgcagtataa |
747 |
Q |
| |
|
||||||||| ||| |||| ||||||||||| ||||| ||||||||||| ||||||| ||||| || ||| |||| | ||||| |||||||| |
|
|
| T |
3818 |
tgatgaaataatggcgaatatcaatgtgctttgttctgctatgttgaataggattcttggaaatgttgataacacttaggttgtcacagtataa |
3911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 747
Target Start/End: Original strand, 26039255 - 26039348
Alignment:
| Q |
654 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaagttgttgcagtataa |
747 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| || | |||||| | ||||| ||||| || |||||||| | ||||| |||||||| |
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|
| T |
26039255 |
tgatgaaatgatgtcgaatgtcaatgtgctttgttcttctttattgaatagggttcttggaaatgttgatagcacttaggttgtcacagtataa |
26039348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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