View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18959_high_3 (Length: 378)
Name: NF18959_high_3
Description: NF18959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18959_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 7129994 - 7130326
Alignment:
| Q |
16 |
ataaaatactatgagtcat----ggggtcacaaattcaatacaagggtgagctaacaaaagatgtgagacctatgcaaaaagcattactgttaattggaa |
111 |
Q |
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| T |
7129994 |
ataaaatactatgagtcatcatgggggtcacaaattcaatacaagggtgagctaacaaaagatgtgagacctatgcaaaaagaattactg---------- |
7130083 |
T |
|
| Q |
112 |
ttagaataatgcttagcaatcagtacannnnnnnaacaaataacaatcatgaatccctaagttttcaagactcttaaactacaagaacccctattaaatt |
211 |
Q |
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| T |
7130084 |
----aataatgcttagcaatcagtacatttttttaacaaataacaatcatgaatccc-aagttttcaagactcttaaactacaacaacccctattaaatt |
7130178 |
T |
|
| Q |
212 |
caacaagatctatgtctctgagtgatggagaaaaggttgatgagcgatcgactataggcgatcaagcactgcaaacctcttatcagatacaaactgtgtc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7130179 |
caacaagatctatgtctctgagtgatggagaaaaggttgatgagctatcgactataagcgatcaagcacttcaaacctcttatcagatacaaactgtgtc |
7130278 |
T |
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| Q |
312 |
agtgtttgaagattagccatttttcctattccactcgagatgtctaag |
359 |
Q |
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| T |
7130279 |
agtgtttgaagattagtcatttttcctattccactcgagatgtctaag |
7130326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 7723252 - 7723357
Alignment:
| Q |
27 |
tgagtcatggggtcacaaattcaatacaagggtgagctaacaaaagatgtgaga-cctatgcaaaaagcat-tactgttaattggaattagaataatgct |
124 |
Q |
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| T |
7723252 |
tgagtcatgaggtcacaaattcaatacaaaagtgagctaacaaaagatgtgagaccctatgcaaaaagcatatactgttaattggaattagaataatgct |
7723351 |
T |
|
| Q |
125 |
tagcaa |
130 |
Q |
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|||||| |
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| T |
7723352 |
tagcaa |
7723357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 7519217 - 7519109
Alignment:
| Q |
16 |
ataaaatactatgagtcatggggtcacaaattcaatacaagggtgagctaacaaaagatgtgagacctatgcaaaaagca-ttactgttaattggaatta |
114 |
Q |
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|||| ||| |||| |||||||||||||||||| | |||| ||||| |||||| |||||||||||||||||||||||||| ||||| |||| |||| ||| |
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| T |
7519217 |
ataacatattatgggtcatggggtcacaaatttagaacaatggtgaactaacataagatgtgagacctatgcaaaaagcatttactattaaatggattta |
7519118 |
T |
|
| Q |
115 |
gaataatgc |
123 |
Q |
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||||||||| |
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| T |
7519117 |
gaataatgc |
7519109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7502148 - 7502091
Alignment:
| Q |
18 |
aaaatactatgagtcatggggtcacaaattcaatacaagggtgagctaacaaaagatg |
75 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
7502148 |
aaaacactatgagtcatggggtcacaaattcaatacaaaggtgaactaacaaaagatg |
7502091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 7493172 - 7493115
Alignment:
| Q |
18 |
aaaatactatgagtcatggggtcacaaattcaatacaagggtgagctaacaaaagatg |
75 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |
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| T |
7493172 |
aaaacactatgagtcatgcggtcacaaattcaatacaaaggtgaactaacaaaagatg |
7493115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 7529633 - 7529588
Alignment:
| Q |
300 |
acaaactgtgtcagtgtttgaagattagccatttttcctattccac |
345 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
7529633 |
acaaactgtgtcagtgtttgaagattagtcatctttcctattccac |
7529588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 7720899 - 7720943
Alignment:
| Q |
300 |
acaaactgtgtcagtgtttgaagattagccatttttcctattcca |
344 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
7720899 |
acaaactgtgtcagtgtttgaagattagtcatctttcctattcca |
7720943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 7521568 - 7521524
Alignment:
| Q |
300 |
acaaactgtgtcagtgtttgaagattagccatttttcctattcca |
344 |
Q |
| |
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||||| |||||||||||||||||||||| ||| |||||||||||| |
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| T |
7521568 |
acaaagtgtgtcagtgtttgaagattagtcatctttcctattcca |
7521524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 7717069 - 7717113
Alignment:
| Q |
300 |
acaaactgtgtcagtgtttgaagattagccatttttcctattcca |
344 |
Q |
| |
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||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
7717069 |
acaaactgtgtcagtgtttgaagcttagtcatctttcctattcca |
7717113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 7127624 - 7127669
Alignment:
| Q |
300 |
acaaactgtgtcagtgtttgaagattagccatttttcctattccac |
345 |
Q |
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||||| ||||||| |||||||||||||| ||| ||||||||||||| |
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| T |
7127624 |
acaaagtgtgtcaatgtttgaagattagtcatctttcctattccac |
7127669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 7483511 - 7483466
Alignment:
| Q |
300 |
acaaactgtgtcagtgtttgaagattagccatttttcctattccac |
345 |
Q |
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||||| ||||| |||||||||||||||| ||| ||||||||||||| |
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| T |
7483511 |
acaaattgtgtaagtgtttgaagattagtcatctttcctattccac |
7483466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 7723382 - 7723422
Alignment:
| Q |
151 |
ataacaatcatgaatccctaagttttcaagactcttaaact |
191 |
Q |
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||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
7723382 |
ataacaatcttgaatccttaagttttcaagactgttaaact |
7723422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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