View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18959_low_2 (Length: 451)
Name: NF18959_low_2
Description: NF18959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18959_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 86 - 442
Target Start/End: Original strand, 14504842 - 14505197
Alignment:
| Q |
86 |
ggaaaatttgctaaaacttaacagaatgatgtagtagttcacaattagatgaacatnnnnnnntgtgtatactataactatagt----agtgaattttga |
181 |
Q |
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| T |
14504842 |
ggaaaatttgctaaaatttaacagaatgatgtagtagttcacaattagatgaacataaaaaaat-----taatataactatagtctatagtgaattttga |
14504936 |
T |
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| Q |
182 |
agacaattgtggaattaatcaattgtcaataggtaaagagagcatgcgtgaaggctgaagggtggataagcctattgtgggaaagtgcctctatttaatg |
281 |
Q |
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| T |
14504937 |
agacaattgtggaattaatcaattgtcaataggtaaagagtgcatgcgtgaaggctgaagggtggataagcctattgtgggaaagtgcctctatttaatg |
14505036 |
T |
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| Q |
282 |
catagttgtggaaattaattaaaggcaaaatttagatgcattttcttgtataactgcggaatatagacatgcatgttacagctgaataggtttccatatg |
381 |
Q |
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| T |
14505037 |
catagttgtggaaattaattaaaggcaatatttagatgcattttcttgtataactgcggaatatggacatgcatgttacagctgaataggtttctatatg |
14505136 |
T |
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| Q |
382 |
catgattgattgcacattttgtcagagaagaacgtgggtctttgtttattacaaatgatga |
442 |
Q |
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| T |
14505137 |
catgattgattacacattttgtcagagaagaacgtgggtctttgtttattacaaatgatga |
14505197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 14504754 - 14504795
Alignment:
| Q |
15 |
taacaaccaatggttttgcttgctaataattgttggttgtgt |
56 |
Q |
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| T |
14504754 |
taacaaccaatggttttgcttgctaataattgttggttgtgt |
14504795 |
T |
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