View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18959_low_4 (Length: 353)
Name: NF18959_low_4
Description: NF18959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18959_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 343703 - 343381
Alignment:
| Q |
18 |
gaaacgtcactggtaacgccaacggcagcgatgaccggtggggaacagctgctgccgccgttccagcaattcggaagaaaggtacaagtgttcgtcaatg |
117 |
Q |
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| T |
343703 |
gaaacgtcaccggtaacgccaatggcagcgatgaccggtggggaacagctgctgccgccgttccagcaattcggaagaaaggtacaagtgttcgtcaatg |
343604 |
T |
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| Q |
118 |
gctggtagtcgacggcaccggcgaagcacaggtaatcgaggccggaaaacacgccatcatgcgtcgtaccggcctccctgcacgtgaccttcgaatcctc |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
343603 |
gctggtagtcgacggcaccggcgaagcacaggtgatcgaggccggaaaacacgccatcatgcgtcgtaccggcctccctgcacgtgaccttcgaatcctc |
343504 |
T |
|
| Q |
218 |
gaccctctcctctcctacccttctaccgttctcggaagagaaagagcaatcgtcatcaacttagaacacatcaaagcaattatcaccgcaaacgaagttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
343503 |
gaccctctcctctcctacccttctaccgttctcggaagagaaagagcaatcgtcatcaacttagaacacatcaaagcaattatcaccgcaaacgaagttc |
343404 |
T |
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| Q |
318 |
ttcttctcaattcacgcgatcct |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
343403 |
ttcttctcaattcacgcgatcct |
343381 |
T |
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