View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1895_high_1 (Length: 449)
Name: NF1895_high_1
Description: NF1895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1895_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 42597745 - 42597312
Alignment:
| Q |
1 |
ctaattgcacatttgagaaaactaactcttattacctttctgaatttagaaaattctcttagacaacaacttttgaaaaacttgaccttcatttcatcac |
100 |
Q |
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| T |
42597745 |
ctaattgcacatttgagaaaactaactcttattacctttctgaatttagaaaattctcttagacaacaacttttgaaaaacttgaccttcatttcatcac |
42597646 |
T |
|
| Q |
101 |
atttataga----agtggagaggtataattgaagggtaggagcaaaggttgatgttctatatatataaaggttaaaatagtgaagggtagctaatgtaca |
196 |
Q |
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| T |
42597645 |
atttatagatggaagtggagaggtataattgaagggtaggagcaaaggttgatgttctatatatataaaggttaaaatagtgaagggtagctaatgtaca |
42597546 |
T |
|
| Q |
197 |
atgtcaataacatttaaaaatttaggcaaaaggaatcataataggtatggtttgttttgtagcttgagtatatttatttaatttagtacaaataatagag |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42597545 |
atgtcaataacatttaaaaatttaggcaaaaggaatcataataggtatggtttgttttgtagcttgagtata----tttaatttagtacaaataatagag |
42597450 |
T |
|
| Q |
297 |
ttttgcacgcattacatttactttgtacgaaataggaccttgtcttgttatgtataaagggaagtacccccgcacgttgggactgataggaaaaaggcac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42597449 |
ttttgcacgcattacatttactttgtacgaaataggaccttgtcttgttatgtataaagggaagtacccccgcacgttgggactgataggaaaaaggcac |
42597350 |
T |
|
| Q |
397 |
acaggagggataaaagtgttctggttggatcaataatt |
434 |
Q |
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| T |
42597349 |
acaggagggataaaagggttctggttggatcaataatt |
42597312 |
T |
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