View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1895_high_10 (Length: 248)
Name: NF1895_high_10
Description: NF1895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1895_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4618810 - 4618570
Alignment:
| Q |
1 |
taagtgtcaagtctgcactgtcatatcagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgttttatgctttaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618810 |
taagtgtcaagtctgcactgtcatatcagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgttttatgctttaatt |
4618711 |
T |
|
| Q |
101 |
attgtgtctaatgtgaacacttggattttgttgacatcaagtttctgaacatgctgagcttgattttgttttgaatatcaattctttatttgtgtattta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4618710 |
attgtgtctaatgtgaacacttggattttgttgacatcaagtttctgaacatgctgagcctgattttgttttgaatatcaactctttatttgtgtattta |
4618611 |
T |
|
| Q |
201 |
cttcttggtgtaatgttttatgttcttgccgggtgtctctg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618610 |
cttcttggtgtaatgttttatgttcttgccgggtgtctctg |
4618570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 7892162 - 7892295
Alignment:
| Q |
1 |
taagtgtcaagtctgcactgtcatat--cagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgtttt-atgcttta |
97 |
Q |
| |
|
||||||| | |||||||| ||||| | ||| |||||||||||||||| | |||||||| | | |||||||| | |||||||||| ||||| ||||| | |
|
|
| T |
7892162 |
taagtgtgatgtctgcaccgtcatctagcagcttttgttcctagaactggcttctagatcggcggtggcaggtccatttcttttttgtttttatgctatg |
7892261 |
T |
|
| Q |
98 |
attattgtgtctaatgtgaacacttggattttgt |
131 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| |
|
|
| T |
7892262 |
attattgtgtctagtgtgaatacttggattttgt |
7892295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 43044123 - 43043990
Alignment:
| Q |
1 |
taagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgtttt-atgcttta |
97 |
Q |
| |
|
|||||||||||||||||| |||| || || || ||||| |||||| |||||||||| ||| ||||||| |||| ||| ||| ||||| |||||||| |
|
|
| T |
43044123 |
taagtgtcaagtctgcaccttcatctcttagcttgtgttctcagaactgggttctagatcgacggtggcagtactatatctgttttgtttttatgcttta |
43044024 |
T |
|
| Q |
98 |
attattgtgtctaatgtgaacacttggattttgt |
131 |
Q |
| |
|
||| ||||||||| | |||||||||||||||||| |
|
|
| T |
43044023 |
attgttgtgtctagtctgaacacttggattttgt |
43043990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 43067868 - 43068000
Alignment:
| Q |
1 |
taagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttct-ttttcgttttatgcttta |
97 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||| |||||| |||||||||| ||| ||||||| ||| | ||| |||| |||||||||||| |
|
|
| T |
43067868 |
taagtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcgacggtggcagcgctctatctgttttatttttatgcttta |
43067967 |
T |
|
| Q |
98 |
attattgtgtctaatgtgaacacttggattttgt |
131 |
Q |
| |
|
||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
43067968 |
attgttgtgtctagtctgaa-acttggattttgt |
43068000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 43082967 - 43082835
Alignment:
| Q |
1 |
taagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgtttt-atgcttta |
97 |
Q |
| |
|
|||||||||||||||||| |||| || || |||||||| |||||| |||||||||| ||| ||||||| ||| | ||| ||| ||||| |||||||| |
|
|
| T |
43082967 |
taagtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcgacggtggcagcgctctatctgttttgtttttatgcttta |
43082868 |
T |
|
| Q |
98 |
attattgtgtctaatgtgaacacttggattttgt |
131 |
Q |
| |
|
||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
43082867 |
attgttgtgtctagtctgaa-acttggattttgt |
43082835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 45984933 - 45985043
Alignment:
| Q |
82 |
ttcgttttatgctttaattattgtgtctaatgtgaacacttggattttgttgacatcaagtttctgaacatgctgagcttgattttgttttgaatatcaa |
181 |
Q |
| |
|
||||||||||| | |||||| ||||||| ||||||||||||||||||| | || | |||||||| || |||||| |||||||||||||||||| |
|
|
| T |
45984933 |
ttcgttttatgttctaatta--gtgtctagtgtgaacacttggattttgctagcagcgagtttctggacctgctga------ttttgttttgaatatcaa |
45985024 |
T |
|
| Q |
182 |
ttctttatttgtgtattta |
200 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
45985025 |
ctctttatttgtgtgttta |
45985043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 3299859 - 3299761
Alignment:
| Q |
1 |
taagtgtcaagtctgcactgtcatatc--agtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcgt-tttatgcttt |
96 |
Q |
| |
|
|||||||||||||||||| ||||| || | ||||||||| | |||| |||||| ||| ||| |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3299859 |
taagtgtcaagtctgcaccgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttcttttccgtgtttatgcttt |
3299761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 38139008 - 38139132
Alignment:
| Q |
1 |
taagtgtcaagtctgcactgtcatat--cagtttttgttcctagaactcggttctagattgactgtggcagggctatttctttttcg-ttttatgcttta |
97 |
Q |
| |
|
|||||||||||||||||| ||||| | ||| ||||||||| |||||| | ||||||||||| |||||| ||| ||||||||||| ||||||||| | |
|
|
| T |
38139008 |
taagtgtcaagtctgcaccgtcatctcacagcttttgttccaagaactggcttctagattgatggtggca-ggccgtttctttttcgtttttatgctatg |
38139106 |
T |
|
| Q |
98 |
attattgtgtctaatgtgaacacttg |
123 |
Q |
| |
|
|||| ||||||| |||||| ||||| |
|
|
| T |
38139107 |
attactgtgtcttgtgtgaatacttg |
38139132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University