View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1895_high_6 (Length: 318)

Name: NF1895_high_6
Description: NF1895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1895_high_6
NF1895_high_6
[»] chr7 (15 HSPs)
chr7 (29-300)||(8610529-8610792)
chr7 (140-301)||(8602702-8602863)
chr7 (140-281)||(8647669-8647810)
chr7 (140-294)||(8591366-8591520)
chr7 (138-258)||(7876850-7876970)
chr7 (172-281)||(3148371-3148480)
chr7 (140-276)||(17261360-17261496)
chr7 (170-281)||(6790408-6790519)
chr7 (138-273)||(8635500-8635635)
chr7 (169-258)||(8572587-8572676)
chr7 (141-258)||(10493017-10493134)
chr7 (218-258)||(8577335-8577375)
chr7 (170-252)||(1302309-1302391)
chr7 (160-258)||(8582651-8582749)
chr7 (170-252)||(8660242-8660324)
[»] chr2 (6 HSPs)
chr2 (174-281)||(16656593-16656700)
chr2 (169-275)||(12257913-12258019)
chr2 (169-246)||(12244431-12244508)
chr2 (188-270)||(43626336-43626418)
chr2 (140-252)||(7543245-7543357)
chr2 (140-252)||(12235766-12235878)
[»] chr1 (3 HSPs)
chr1 (170-270)||(15596057-15596157)
chr1 (160-297)||(34465225-34465362)
chr1 (198-258)||(4677556-4677616)
[»] chr5 (1 HSPs)
chr5 (175-271)||(28220950-28221046)
[»] chr4 (2 HSPs)
chr4 (140-276)||(9323062-9323198)
chr4 (140-276)||(9377541-9377677)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 8610529 - 8610792
Alignment:
Q  29 gcattgtgtaattttatatttttcataaaaagcatagcatttaaactatagtatctaaatcaatttaaaaaaccatgcaagaaacnnnnnnnnnnnnnnn 128  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||                    
T  8610529 gcattgtgtaattttatatttttcataaaaagcatagcagataaactatagtatctaaatcaatttaaaaaaccatgcaagaaagaaaaaaaa------- 8610621  T
Q  129 ggataaattagttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaa 228  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||||||||||||    
T  8610622 -gataaattagttaccaaagactgtgttagctgggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaa 8610720  T
Q  229 agaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8610721 agaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagc 8610792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 140 - 301
Target Start/End: Original strand, 8602702 - 8602863
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||  |||||  ||||||| |||||||| |||||||| || ||||||||| ||||||||| |||| |||  |||||||||||||||||||| |    
T  8602702 ttaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtag 8602801  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagct 301  Q
    ||||||||||||| ||||| || || ||||| || ||||||||||| |||||||| ||||||    
T  8602802 ttctgtttccttgatcattgtgaataatctctgccctgttgttttggtcctgccaaacagct 8602863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 281
Target Start/End: Original strand, 8647669 - 8647810
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| ||||| |  ||||| |||||||| |||||||| || ||||||||  |||||||||||||| | | |||||||||||||||||| || |    
T  8647669 ttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtag 8647768  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgt 281  Q
    ||||||||||||| ||||| || || |||||| |||| ||||    
T  8647769 ttctgtttccttgatcattgtgaataatctcaactctattgt 8647810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 294
Target Start/End: Original strand, 8591366 - 8591520
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||| ||||| ||||| |||||||| |||||||| || ||||| || ||||||||  ||||||||||||||  ||  ||||||||||||||||| ||      
T  8591366 ttaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaa 8591465  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgcca 294  Q
    |||| |||||||| ||||| || || ||||| ||| | |||||||| ||||||||    
T  8591466 ttctatttccttgatcattgtgaataatctctgctgtattgttttggtcctgcca 8591520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 7876970 - 7876850
Alignment:
Q  138 agttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagt 237  Q
    ||||||||||||| ||||| | |||||| || ||||| |||||||| || ||||||||  ||||||||||||||   | |||||||||||||||||| ||    
T  7876970 agttaccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgt 7876871  T
Q  238 ggttctgtttccttgctcatt 258  Q
     |||||||| ||||| |||||    
T  7876870 tgttctgttgccttgttcatt 7876850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 3148371 - 3148480
Alignment:
Q  172 agcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctca 271  Q
    ||||||||| || || ||||||||   ||||||||||||| ||| |||||||||||||||||| |||||| |||| ||||| ||||| || || ||||||    
T  3148371 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctca 3148470  T
Q  272 gctctgttgt 281  Q
     |||||||||    
T  3148471 actctgttgt 3148480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 17261360 - 17261496
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| |||||  ||||||||   ||||||||||| || || ||||||||| ||||||||| |||   ||  ||||||||||||||||||||      
T  17261360 ttaccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaa 17261459  T
Q  240 ttctgtttccttgctcattatggattatctcagctct 276  Q
    || |||||||||| ||||| || || |||||| ||||    
T  17261460 ttttgtttccttgatcattgtgaatgatctcaactct 17261496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 6790408 - 6790519
Alignment:
Q  170 gcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct 269  Q
    ||||||||||  || || ||||||||| |||||||||| ||| | | |||||||||||||||||| |||||| |||| ||||| ||||| || || ||||    
T  6790408 gcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatct 6790507  T
Q  270 cagctctgttgt 281  Q
    || |||| ||||    
T  6790508 caactctattgt 6790519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 273
Target Start/End: Complemental strand, 8635635 - 8635500
Alignment:
Q  138 agttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagt 237  Q
    ||||||||||||| || || | |||||| || | ||| || ||||| || ||||||||  ||||||||||  |  ||| |||||||||| ||||||| ||    
T  8635635 agttaccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgt 8635536  T
Q  238 ggttctgtttccttgctcattatggattatctcagc 273  Q
    | ||||||| ||||||||||| ||||| ||||||||    
T  8635535 gattctgttcccttgctcattgtggatgatctcagc 8635500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 8572587 - 8572676
Alignment:
Q  169 agcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatt 258  Q
    ||||||||||||||| || ||||||||| |||| ||||||  |  ||  ||||||||| |||| ||||| |||||||||||||| |||||    
T  8572587 agcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcatt 8572676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 10493134 - 10493017
Alignment:
Q  141 taccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggt 240  Q
    |||||||||| |||||  | ||||| |  |||| |||||| || || ||||||||| ||||||||||||||     |||||||||||||||||| || ||    
T  10493134 taccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagt 10493035  T
Q  241 tctgtttccttgctcatt 258  Q
    ||| |||||||| |||||    
T  10493034 tctatttccttgatcatt 10493017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 8577335 - 8577375
Alignment:
Q  218 aaagcaacaaaagaaggagtggttctgtttccttgctcatt 258  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  8577335 aaagcaacacaagaaggagtggttctgtttccttgatcatt 8577375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 1302309 - 1302391
Alignment:
Q  170 gcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttg 252  Q
    ||||| ||||| || || ||||||||| |||||||||||||| | | ||||||||||||||| || || ||| |||| |||||    
T  1302309 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttg 1302391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 8582651 - 8582749
Alignment:
Q  160 tgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatt 258  Q
    |||||| ||||||||||||||||| || ||||||||  |||| ||||||  |  ||  ||||||||| ||||||| || ||| |||||||||| |||||    
T  8582651 tgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcatt 8582749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 8660242 - 8660324
Alignment:
Q  170 gcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttg 252  Q
    ||||| ||||| || || ||||||||  |||||||||||||  ||| |||||||||||| ||||| || ||| ||||||||||    
T  8660242 gcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttg 8660324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 16656700 - 16656593
Alignment:
Q  174 cttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagc 273  Q
    ||||||| || || ||||||||| ||||||||||||||  || |||||||||||||||||| || ||||||||||| || ||||| || || ||||| ||    
T  16656700 cttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgc 16656601  T
Q  274 tctgttgt 281  Q
    ||||||||    
T  16656600 tctgttgt 16656593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 12258019 - 12257913
Alignment:
Q  169 agcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatc 268  Q
    |||||||||||| || || ||||||||  |||||||||||||   ||  ||||||||| ||||||| || |||||||||||||| || || || || |||    
T  12258019 agcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatc 12257920  T
Q  269 tcagctc 275  Q
    |||||||    
T  12257919 tcagctc 12257913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 12244508 - 12244431
Alignment:
Q  169 agcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtt 246  Q
    ||||||||||||||| || ||||||||  | |||||||||||  ||| |||||||||| ||||||| || ||||||||    
T  12244508 agcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgtt 12244431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 43626336 - 43626418
Alignment:
Q  188 gcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctc 270  Q
    ||||||||  |||||||||| ||   || ||||| |||||||||||| || |||||||||||||| ||||| ||||| |||||    
T  43626336 gcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctc 43626418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 7543245 - 7543357
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| |||||    ||||| |||||||||||||| || ||   ||||||| ||||||| ||||   | | |||||||||||||||||| || |    
T  7543245 ttaccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttg 7543344  T
Q  240 ttctgtttccttg 252  Q
    ||||||| |||||    
T  7543345 ttctgttgccttg 7543357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 252
Target Start/End: Original strand, 12235766 - 12235878
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| |||||    ||||| |||||||||||||| || || ||||||||  ||||||| ||||   | | |||||||||||||||||| || |    
T  12235766 ttaccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttg 12235865  T
Q  240 ttctgtttccttg 252  Q
    |||| || |||||    
T  12235866 ttctattgccttg 12235878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 15596057 - 15596157
Alignment:
Q  170 gcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct 269  Q
    ||||||||| | || || ||||||||  ||||||||||||||  || ||||| |||||||||||| ||  ||||||||||||| ||||| ||||| ||||    
T  15596057 gcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatct 15596156  T
Q  270 c 270  Q
    |    
T  15596157 c 15596157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 297
Target Start/End: Complemental strand, 34465362 - 34465225
Alignment:
Q  160 tgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatta 259  Q
    |||||| | ||||| |||||| || || |||| |||| |||| |||||||||  ||  ||||||||||||||||| |||||| |||| ||||| |||||     
T  34465362 tgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattg 34465263  T
Q  260 tggattatctcagctctgttgttttgttcctgccatac 297  Q
    |  || |||||  ||||  ||| |||||||||||||||    
T  34465262 tcaataatctctactctactgtgttgttcctgccatac 34465225  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 4677616 - 4677556
Alignment:
Q  198 tcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatt 258  Q
    |||||||||||||| |||  ||||||||||||||||| || ||| |||| ||||| |||||    
T  4677616 tcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcatt 4677556  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 28220950 - 28221046
Alignment:
Q  175 ttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctca 271  Q
    ||||||||| || ||||| ||  ||||||||| |||| | | ||||||||||||||||||||| ||| |||| ||||| ||||| || || ||||||    
T  28220950 ttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctca 28221046  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 276
Target Start/End: Complemental strand, 9323198 - 9323062
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||  |||||  | ||||| | ||||| |||||| || || ||||||||  |||||||||| |||     |||||||||||||||||| || |    
T  9323198 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9323099  T
Q  240 ttctgtttccttgctcattatggattatctcagctct 276  Q
    ||| ||||||||| ||||| || || |||||| ||||    
T  9323098 ttcggtttccttgatcattgtgaataatctcaactct 9323062  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 276
Target Start/End: Complemental strand, 9377677 - 9377541
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||  |||||  | ||||| | ||||| |||||| || || ||||||||  |||||||||| |||     |||||||||||||||||| || |    
T  9377677 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9377578  T
Q  240 ttctgtttccttgctcattatggattatctcagctct 276  Q
    ||| ||||||||| ||||| || || |||||| ||||    
T  9377577 ttcggtttccttgatcattgtgaataatctcaactct 9377541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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