View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1895_high_9 (Length: 300)

Name: NF1895_high_9
Description: NF1895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1895_high_9
NF1895_high_9
[»] scaffold0083 (1 HSPs)
scaffold0083 (18-294)||(54372-54645)
[»] chr3 (25 HSPs)
chr3 (18-294)||(9980492-9980765)
chr3 (79-294)||(10035090-10035302)
chr3 (79-294)||(10263788-10264000)
chr3 (18-246)||(9852903-9853128)
chr3 (22-246)||(10520515-10520736)
chr3 (19-238)||(10583609-10583829)
chr3 (18-294)||(10129948-10130214)
chr3 (19-246)||(9841885-9842109)
chr3 (19-199)||(10666562-10666742)
chr3 (19-203)||(10372768-10372953)
chr3 (19-188)||(10430914-10431083)
chr3 (22-203)||(10360658-10360840)
chr3 (19-189)||(11778855-11779024)
chr3 (19-189)||(11772261-11772430)
chr3 (79-201)||(10531868-10531989)
chr3 (74-199)||(10092077-10092202)
chr3 (74-199)||(10198959-10199084)
chr3 (226-294)||(10430718-10430786)
chr3 (85-199)||(10503744-10503857)
chr3 (79-199)||(10680666-10680785)
chr3 (82-171)||(10086265-10086354)
chr3 (82-171)||(10193185-10193274)
chr3 (83-171)||(11242462-11242551)
chr3 (107-153)||(8585532-8585578)
chr3 (19-53)||(10035030-10035064)
[»] chr2 (1 HSPs)
chr2 (19-153)||(26909915-26910049)
[»] chr4 (1 HSPs)
chr4 (19-171)||(17849813-17849965)
[»] chr8 (2 HSPs)
chr8 (87-171)||(44954550-44954634)
chr8 (116-153)||(11488217-11488254)


Alignment Details
Target: scaffold0083 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 54645 - 54372
Alignment:
Q  18 agagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattgg 117  Q
    |||||||||||||||||||||||||||||| ||||| |||  |||| | |||  | | || |||||||||||||||||||||||||||||||||||||||    
T  54645 agagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattgg 54546  T
Q  118 tccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 217  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54545 tccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 54446  T
Q  218 agaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 294  Q
    |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54445 agaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 54372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 9980492 - 9980765
Alignment:
Q  18 agagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattgg 117  Q
    |||||||||||||||||||||||||||||| ||||| |||  |||| | |||  | | || |||||||||||||||||||||||||||||||||||||||    
T  9980492 agagtcattaccagaagacagcctccctgaatctcttaaggaactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattgg 9980591  T
Q  118 tccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 217  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980592 tccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 9980691  T
Q  218 agaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 294  Q
    |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9980692 agaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 9980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 10035090 - 10035302
Alignment:
Q  79 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |  |||||||||||||||||||||    
T  10035090 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatagatataaatcatgaagtcacaatatgatagacaa 10035189  T
Q  179 gttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035190 gttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 10035286  T
Q  279 atgggtcctatgctac 294  Q
    ||||||||| ||||||    
T  10035287 atgggtcctctgctac 10035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 79 - 294
Target Start/End: Original strand, 10263788 - 10264000
Alignment:
Q  79 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 178  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  ||||||| |  |||||||||||||||||||||    
T  10263788 ccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatccctttcataagaataaatgatgaagtcacaatatgatagacaa 10263887  T
Q  179 gttgtgttcccatttcaggtatgttccacagttcctaccagaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10263888 gttgtgttcccatttcaggtatgttccacagttcctaccagaaa---gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctc 10263984  T
Q  279 atgggtcctatgctac 294  Q
    ||||||||| ||||||    
T  10263985 atgggtcctctgctac 10264000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 9852903 - 9853128
Alignment:
Q  18 agagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattgg 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||   | ||||||||||||||||||||||||||||||||||||||||||||    
T  9852903 agagtcattaccagaagacagcctccctgactcactgaagagactggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattgg 9853002  T
Q  118 tccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 217  Q
    ||||||||||||||||||||||||||| |||||||| || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9853003 tccaaaattgctcacatccctgtcatagaaataaatgaccaggttacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 9853102  T
Q  218 agaaaactgccaataatcaatcatctgta 246  Q
    |||||   |||||||||||||| ||||||    
T  9853103 agaaa---gccaataatcaatcctctgta 9853128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 10520515 - 10520736
Alignment:
Q  22 tcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggtcca 121  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||  |   |||||||||||||||||||||||||||||||||||||||||||||||    
T  10520515 tcattaccagaagacagcctccctgactctctgaagagactgctcatttgggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtcca 10520614  T
Q  122 aaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctaccagaa 221  Q
    |||||||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10520615 aaattgctcacatcccagtcatatcaataaattaccaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctaccagaa 10520714  T
Q  222 aactgccaataatcaatcatctgta 246  Q
    |   |||||||||||||| ||||||    
T  10520715 a---gccaataatcaatcctctgta 10520736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 10583609 - 10583829
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    |||||||||||||||||||||||||||||||||||  || |||||   |||      || ||||||||||||||||||||||||||||| ||| ||||||    
T  10583609 gagtcattaccagaagacagcctccctgactctcttgagcgactgaccatccaattttgcccattgttagaagaaaggtataaaaggaatgaatattggt 10583708  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgttccacagttcctacc 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  10583709 ccaaaattgctcacatccctgtcatacaaataaatcacaaagtcacaatatgatagacaagttgtgttcccgttttcaggtatgttccacatttcctacc 10583808  T
Q  218 agaaaactgccaataatcaat 238  Q
    |||||||||||||||||||||    
T  10583809 agaaaactgccaataatcaat 10583829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 10129948 - 10130214
Alignment:
Q  18 agagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattgg 117  Q
    |||||||||||||||||||||||||||||| ||||| | |  ||||   ||     |||||||||||||||||||||||||||||||||||||||||||     
T  10129948 agagtcattaccagaagacagcctccctgattctcttatgcaactgtgcattcaaggatgtccattgttagaagaaaggtataaaaggaaggaacattgc 10130047  T
Q  118 tccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 217  Q
    ||||||||||||||||||||| ||| | | ||      ||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  10130048 tccaaaattgctcacatccctttcaaaaatat------caaaggcacaatatgatagacaagttgtgttcccatttcaggtatgctcct-agttcctacc 10130140  T
Q  218 agaaaactgccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 294  Q
    |||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10130141 agaaa---gccaataatcaatcctctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 9841885 - 9842109
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    |||||||||||||||||||||||||||||||||||  || | ||| | ||  |  ||||||||||||||||||||||||||||||||||||||||||| |    
T  9841885 gagtcattaccagaagacagcctccctgactctcttgagcgtctgaacatttggggatgtccattgttagaagaaaggtataaaaggaaggaacattgct 9841984  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacca 218  Q
    ||||||||||||||||||||||||||   |||||  || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9841985 ccaaaattgctcacatccctgtcatatggataaaccaccaagtcagaatatgatagacaagttgtgttcccgtttcaggtatgttccacagttcctacca 9842084  T
Q  219 gaaaactgccaataatcaatcatctgta 246  Q
    ||||   |||||||||||||| ||||||    
T  9842085 gaaa---gccaataatcaatcctctgta 9842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 10666562 - 10666742
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    ||||||||||||||||||||||||||||||||||| |||  |||| | ||      ||||||||||||||||||||||||||||||||||||||||||||    
T  10666562 gagtcattaccagaagacagcctccctgactctcttaaggaactgcacattgaggaatgtccattgttagaagaaaggtataaaaggaaggaacattggt 10666661  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggta 199  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||  |||||||||    
T  10666662 ccaaaattgctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacgagttgtgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 10372953 - 10372768
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    |||||||||||||||||||||||||||  |||||||||||||||||  || |   |||| ||||||||||||||||||||||||||||||||||||||||    
T  10372953 gagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggt 10372854  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgtt 203  Q
    ||||||||||||||||||| |||||| |||||||  || || |||||||||||||||||||||||||||||  |||||||||||||    
T  10372853 ccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgatagacaagttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 10431083 - 10430914
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    ||||||||||||||||||||||||||||||||||| |||  ||||   || ||   ||||||||||||||||||||||||||||||||||||||||||||    
T  10431083 gagtcattaccagaagacagcctccctgactctcttaagcaactgagaattagggaatgtccattgttagaagaaaggtataaaaggaaggaacattggt 10430984  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttcc 188  Q
    |||||||||||||||||||||||||| | |||||| |  |||||||||||||||||||||||||||||||    
T  10430983 ccaaaattgctcacatccctgtcatagatataaatgatgaagtcacaatatgatagacaagttgtgttcc 10430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 10360840 - 10360658
Alignment:
Q  22 tcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggtcca 121  Q
    |||||||||||||||||||||||||||||||| |||  |||||| |||  |   || |||||||||||||||||||||||||||||||||||||| ||||    
T  10360840 tcattaccagaagacagcctccctgactctcttaaggaactggacatctatgattgcccattgttagaagaaaggtataaaaggaaggaacattgctcca 10360741  T
Q  122 aaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgtt 203  Q
    |||||||||||||||| |||||| |||||||  || ||||||||||||||||||||||||||||||||  |||||||||||||    
T  10360740 aaattgctcacatccccgtcataaaaataaacgaccaagtcacaatatgatagacaagttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 11779024 - 11778855
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    ||||||||||| |||||||||||||| |||||||| |||  ||||   ||  |  |||| ||||||||||||||||||||||||||||| ||||||||||    
T  11779024 gagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggt 11778925  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc 189  Q
    ||||||| |||||||||||||||||| |||||||| | ||||||||||||||| | ||||| |||||||||    
T  11778924 ccaaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaatatgaga-acaagctgtgttccc 11778855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 11772261 - 11772430
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    ||||||||||| |||||||||||||| |||||||| |||  ||||   ||  |  |||| ||||||||||||||||||||||||||||| ||||||||||    
T  11772261 gagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggt 11772360  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtgttccc 189  Q
    ||||||| |||||||||||||||||| | |||||| | ||||||||||||||| | ||||| |||||||||    
T  11772361 ccaaaatcgctcacatccctgtcatagatataaatgaaaaagtcacaatatgaga-acaagctgtgttccc 11772430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 10531868 - 10531989
Alignment:
Q  79 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 178  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||  ||||||  |  |||| ||||||||| ||||||    
T  10531868 ccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcataataataaacaagcaagttacaatatga-agacaa 10531966  T
Q  179 gttgtgttcccatttcaggtatg 201  Q
    ||||||||||| |||||||||||    
T  10531967 gttgtgttcccgtttcaggtatg 10531989  T

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Target: chr3; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 10092077 - 10092202
Alignment:
Q  74 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 173  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||  || ||  ||||||||||||    
T  10092077 gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatcacaataaacaaccaacgcacaatatgata 10092176  T
Q  174 gacaagttgtgttcccatttcaggta 199  Q
    |||||| |||| |||  |||||||||    
T  10092177 gacaagctgtgctcctgtttcaggta 10092202  T

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Target: chr3; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 10198959 - 10199084
Alignment:
Q  74 gatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgata 173  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||  || ||  ||||||||||||    
T  10198959 gatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatcacaataaacaaccaacgcacaatatgata 10199058  T
Q  174 gacaagttgtgttcccatttcaggta 199  Q
    |||||| |||| |||  |||||||||    
T  10199059 gacaagctgtgctcctgtttcaggta 10199084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 10430786 - 10430718
Alignment:
Q  226 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctatgctac 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10430786 gccaataatcaatcatctgtacgacacacctcttaatattttcatatcatctcatgggtcctctgctac 10430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 199
Target Start/End: Original strand, 10503744 - 10503857
Alignment:
Q  85 ttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaagttgtg 184  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||    ||||||||||||||  |||| | ||||    
T  10503744 ttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcatagaaatagatggacaagtcacaatatga-ggacaggctgtg 10503842  T
Q  185 ttcccatttcaggta 199  Q
    ||||| |||||||||    
T  10503843 ttcccgtttcaggta 10503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 10680666 - 10680785
Alignment:
Q  79 ccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatgatagacaa 178  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||  ||||||  |  ||||||||||||||  | |||    
T  10680666 ccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcataataataaacaagcaagtcacaatatga-ggtcaa 10680764  T
Q  179 gttgtgttcccatttcaggta 199  Q
    |||||||| || |||||||||    
T  10680765 gttgtgtttccgtttcaggta 10680785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 10086265 - 10086354
Alignment:
Q  82 ttgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 171  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||  | || |||||||||||    
T  10086265 ttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatatga 10086354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 10193185 - 10193274
Alignment:
Q  82 ttgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 171  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||  | || |||||||||||    
T  10193185 ttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatatga 10193274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 11242551 - 11242462
Alignment:
Q  83 tgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaatta-caaagtcacaatatga 171  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| ||||||||  |||||| |  ||||||| | | ||||||||||||||    
T  11242551 tgttagaagaaaggtatcaaaagcaggaacattggtccaaaatagctcacattactgtcaaaataataaatgacccaagtcacaatatga 11242462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 8585578 - 8585532
Alignment:
Q  107 aggaacattggtccaaaattgctcacatccctgtcatacaaataaat 153  Q
    |||||||||||||||| ||||||||||| ||||||||| | ||||||    
T  8585578 aggaacattggtccaacattgctcacatacctgtcataaatataaat 8585532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 10035030 - 10035064
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctct 53  Q
    |||||||||||||||||||||||| ||||||||||    
T  10035030 gagtcattaccagaagacagcctcactgactctct 10035064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 26909915 - 26910049
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    |||||||||||||||||||||||||| ||||||||  |||  ||||| ||       || |||||||||||||||||||| |||||||||||||||||||    
T  26909915 gagtcattaccagaagacagcctccccgactctcttgagatgctggaaatgtcatcttgcccattgttagaagaaaggtacaaaaggaaggaacattggt 26910014  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaat 153  Q
    |||||||||||||||||||||||||||||||||||    
T  26910015 ccaaaattgctcacatccctgtcatacaaataaat 26910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 17849965 - 17849813
Alignment:
Q  19 gagtcattaccagaagacagcctccctgactctctgaagagactggagatcagtcgatgtccattgttagaagaaaggtataaaaggaaggaacattggt 118  Q
    ||||| |||||||||||||||||||||  |||||| ||| ||||||  ||  | ||||| ||  | ||||||||||||||||||||| ||||||||||||    
T  17849965 gagtcgttaccagaagacagcctcccttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggt 17849866  T
Q  119 ccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 171  Q
    |||||||||||||||||||||||||| ||||  |  || ||||||||||||||    
T  17849865 ccaaaattgctcacatccctgtcatagaaattgaggaccaagtcacaatatga 17849813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 44954634 - 44954550
Alignment:
Q  87 agaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaattacaaagtcacaatatga 171  Q
    |||||||||||||| |||||||||||||||||||||||||||| | || | ||||||| ||||| ||  | ||||||||||||||    
T  44954634 agaagaaaggtatagaaggaaggaacattggtccaaaattgctaaaattcatgtcatagaaatagatggccaagtcacaatatga 44954550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 11488217 - 11488254
Alignment:
Q  116 ggtccaaaattgctcacatccctgtcatacaaataaat 153  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  11488217 ggtccaaaattgctcacatccctgtcaaagaaataaat 11488254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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