View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1895_low_14 (Length: 231)
Name: NF1895_low_14
Description: NF1895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1895_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 51273919 - 51274120
Alignment:
| Q |
19 |
gtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaacc |
118 |
Q |
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| T |
51273919 |
gtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaacc |
51274018 |
T |
|
| Q |
119 |
ggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggt |
218 |
Q |
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| T |
51274019 |
ggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggt |
51274118 |
T |
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| Q |
219 |
tc |
220 |
Q |
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|| |
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| T |
51274119 |
tc |
51274120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 14907948 - 14908094
Alignment:
| Q |
19 |
gtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaacc |
118 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| |
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| T |
14907948 |
gtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcctcacaaaagataggatcaaatttccactccctccaccgctacgaacc |
14908047 |
T |
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| Q |
119 |
ggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
165 |
Q |
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| T |
14908048 |
agtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
66 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
164 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
165 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
220 |
Q |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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