View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1895_low_15 (Length: 228)

Name: NF1895_low_15
Description: NF1895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1895_low_15
NF1895_low_15
[»] chr2 (3 HSPs)
chr2 (8-228)||(14735572-14735796)
chr2 (50-101)||(17303234-17303285)
chr2 (50-101)||(5887909-5887960)
[»] chr7 (3 HSPs)
chr7 (50-223)||(44629261-44629432)
chr7 (5-79)||(47520480-47520555)
chr7 (51-157)||(8061304-8061412)
[»] chr3 (1 HSPs)
chr3 (5-203)||(4221063-4221260)
[»] chr1 (1 HSPs)
chr1 (5-158)||(23825919-23826072)
[»] chr5 (1 HSPs)
chr5 (13-101)||(15974128-15974217)
[»] chr4 (3 HSPs)
chr4 (58-101)||(52797844-52797887)
chr4 (50-87)||(46852133-46852170)
chr4 (22-101)||(26494424-26494504)
[»] chr8 (1 HSPs)
chr8 (5-88)||(27084455-27084539)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 14735796 - 14735572
Alignment:
Q  8 tctttagggacagacaggggccatgacat-ccccaaatttttgttatatactatattaggtgtattatatcaattagaatttggttgttgtagtgaaaat 106  Q
    ||||||||  ||||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  14735796 tctttaggatcagacaggggccatggcattccccagatttttcttatatactatattaggtgtattatatcaattagaatttggttgttgttgtggaaat 14735697  T
Q  107 ggagtactgtaagttgttaaaggttgttggttcaacacttacacatcttcttcttattacatttttaatcttctacttttacatattttatta---aaaa 203  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||    
T  14735696 ggggtactgtaaattgttaaaggttgttggttcaacacttacacatcttcttcttattacatatttaatcttctacttttacatattttattaaaaaaaa 14735597  T
Q  204 caacctttttaaggggattccaatc 228  Q
     ||| ||||||||||||||| ||||    
T  14735596 aaacgtttttaaggggattcgaatc 14735572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 17303285 - 17303234
Alignment:
Q  50 ttatatactatattaggtgtattatatcaattagaatttggttgttgtagtg 101  Q
    |||||||||||||||||||||| |||||||| | |||| |||||||||||||    
T  17303285 ttatatactatattaggtgtataatatcaataacaattcggttgttgtagtg 17303234  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 5887909 - 5887960
Alignment:
Q  50 ttatatactatattaggtgtattatatcaattagaatttggttgttgtagtg 101  Q
    |||||||||| ||||||||||| |||||||| | ||||||||||||| ||||    
T  5887909 ttatatactacattaggtgtataatatcaataataatttggttgttgcagtg 5887960  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 44629261 - 44629432
Alignment:
Q  50 ttatatactatattaggtgtattatatcaattagaatttggttgttgtagt-gaaaatggagtactgtaagttgttaaaggttgttggttcaacacttac 148  Q
    ||||||||||||||||||||||||||||||||| | || || ||||| ||| ||||  || || |||||| ||  ||||||| |  |||| ||||||| |    
T  44629261 ttatatactatattaggtgtattatatcaattaaatttcggctgttgcagtggaaaggggggtgctgtaatttactaaaggtcgccggttaaacacttcc 44629360  T
Q  149 acatcttcttcttattacatttttaatcttctacttttacatattttattaaaaacaacctttttaaggggattc 223  Q
    |||   ||||||| |||||| |||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||    
T  44629361 aca---tcttctttttacatatttaatcttctacttttacatattgtattaaaaaaaacgtttttgaggggattc 44629432  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 47520555 - 47520480
Alignment:
Q  5 atctctttagggacagacaggggccatgacatccccaaattttt-gttatatactatattaggtgtattatatcaa 79  Q
    ||||||| |||||||| | ||||||||||||||||| || |||| ||||||||||||||||| |||||||||||||    
T  47520555 atctcttcagggacaggctggggccatgacatcccccaagttttcgttatatactatattagatgtattatatcaa 47520480  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 8061304 - 8061412
Alignment:
Q  51 tatatactatattaggtgtattatatcaattagaatttggttgttgtagtgaaaatggagtactgtaagttgttaaaggttgt--tggttcaacacttac 148  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||| |||| |||  | ||||  ||| ||| ||||||||||   |||||||||||| |    
T  8061304 tatatactatattaggtgtattatatcaatcagattttggatgttgcagtggaaagagggtaccataaattgctaaaggttgtgcaggttcaacacttcc 8061403  T
Q  149 acatcttct 157  Q
    || ||||||    
T  8061404 acgtcttct 8061412  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 4221063 - 4221260
Alignment:
Q  5 atctctttagggacagacaggggccatgacatccccaaatttttg-ttatatactatattaggtgtattatatcaattagaatttggttgttgtagtgaa 103  Q
    |||||||||||||||| ||||||||||| ||||||| |  ||||  ||||||  | ||||||||||  || |||||||||| ||  | ||||| |||| |    
T  4221063 atctctttagggacaggcaggggccatggcatcccccaggttttccttatattttgtattaggtgtcataaatcaattagatttcagctgttgcagtgga 4221162  T
Q  104 aatggagtactgtaagttgttaaaggttgttggttcaacacttacacatcttcttcttattacatttttaatcttctacttttacatattttattaaaaa 203  Q
    ||||| ||   |||| ||| |||| |||| ||||||||||||| |||| | ||||||| || ||| |||| ||||||||||||||| ||| |||||||||    
T  4221163 aatggggtgtcgtaaattgctaaaagttgctggttcaacacttccaca-catcttctttttgcatattta-tcttctacttttacaaattgtattaaaaa 4221260  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 23825919 - 23826072
Alignment:
Q  5 atctctttagggacagacaggggccatgacatcc-ccaaatttttgttatatactatattaggtgtattatatcaattagaatttggttgttgtagtgaa 103  Q
    |||||||||||||||  ||||||||||| ||||| |||  ||||  |||||||||||||||||||||||||| |||||| | ||  |||||| ||||| |    
T  23825919 atctctttagggacaagcaggggccatgtcatcctccaggttttctttatatactatattaggtgtattataccaattatacttcagttgttatagtgga 23826018  T
Q  104 aatggagtactgtaagttgttaaaggttgttggttcaacacttacacatcttctt 158  Q
     |||  || |||||| | |||||| ||||| ||||||||| || | |||||||||    
T  23826019 catgaggtgctgtaaatcgttaaa-gttgtcggttcaacattttctcatcttctt 23826072  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 15974217 - 15974128
Alignment:
Q  13 agggacagacaggggccatgacatccccaa-atttttgttatatactatattaggtgtattatatcaattagaatttggttgttgtagtg 101  Q
    |||| ||| |||| |||||| ||||||| | |||||  |||||||||||||||||||||| || ||||| | ||||| ||||||||||||    
T  15974217 aggggcaggcaggtgccatggcatcccctagattttccttatatactatattaggtgtatgatttcaataacaatttagttgttgtagtg 15974128  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 52797887 - 52797844
Alignment:
Q  58 tatattaggtgtattatatcaattagaatttggttgttgtagtg 101  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||    
T  52797887 tatattaggtgtaatatatcaataagaattcggttgttgtagtg 52797844  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 46852170 - 46852133
Alignment:
Q  50 ttatatactatattaggtgtattatatcaattagaatt 87  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  46852170 ttatatattatattaggtgtattataacaattagaatt 46852133  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 26494424 - 26494504
Alignment:
Q  22 caggggccatgacatccccaa-atttttgttatatactatattaggtgtattatatcaattagaatttggttgttgtagtg 101  Q
    |||| |||||||||||||| | ||||   |||||||||||||||||||||| || ||||| | ||||| ||||||| ||||    
T  26494424 caggtgccatgacatcccccagatttcccttatatactatattaggtgtataatttcaataataatttagttgttgcagtg 26494504  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 27084539 - 27084455
Alignment:
Q  5 atctctttagggacagacaggggccatgacatcccc-aaatttttgttatatactatattaggtgtattatatcaattagaattt 88  Q
    |||||||| |||  || |||| |||||| ||||||| ||| |||  ||||||||||||||||||||||||| |||| ||| ||||    
T  27084539 atctctttgggggaaggcaggtgccatggcatcccccaaagtttccttatatactatattaggtgtattatttcaactaggattt 27084455  T

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