View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1895_low_4 (Length: 363)

Name: NF1895_low_4
Description: NF1895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1895_low_4
NF1895_low_4
[»] chr7 (24 HSPs)
chr7 (29-345)||(8610529-8610837)
chr7 (140-336)||(8602702-8602898)
chr7 (140-333)||(8647669-8647862)
chr7 (140-336)||(8591366-8591562)
chr7 (138-333)||(7876775-7876970)
chr7 (141-333)||(10492942-10493134)
chr7 (172-333)||(3148371-3148532)
chr7 (170-346)||(8660242-8660418)
chr7 (217-333)||(8668510-8668626)
chr7 (170-321)||(6790408-6790559)
chr7 (217-346)||(29581093-29581222)
chr7 (170-346)||(1302309-1302485)
chr7 (217-333)||(13332091-13332207)
chr7 (140-276)||(17261360-17261496)
chr7 (138-273)||(8635500-8635635)
chr7 (198-321)||(8655375-8655498)
chr7 (278-336)||(8560801-8560859)
chr7 (218-336)||(8577335-8577453)
chr7 (160-346)||(29576917-29577103)
chr7 (160-333)||(8582651-8582824)
chr7 (169-258)||(8572587-8572676)
chr7 (199-333)||(8584477-8584611)
chr7 (199-333)||(8630255-8630389)
chr7 (140-309)||(17269068-17269237)
[»] chr2 (7 HSPs)
chr2 (174-333)||(16656541-16656700)
chr2 (169-346)||(12257842-12258019)
chr2 (140-324)||(12235766-12235950)
chr2 (169-333)||(12244344-12244508)
chr2 (188-333)||(43626336-43626481)
chr2 (140-333)||(7543245-7543438)
chr2 (169-321)||(16661019-16661171)
[»] chr5 (1 HSPs)
chr5 (175-333)||(28220950-28221108)
[»] chr1 (4 HSPs)
chr1 (170-340)||(15596057-15596227)
chr1 (160-346)||(34465176-34465362)
chr1 (198-346)||(4677468-4677616)
chr1 (283-312)||(52549059-52549088)
[»] chr4 (4 HSPs)
chr4 (140-327)||(9323011-9323198)
chr4 (140-327)||(9377490-9377677)
chr4 (217-327)||(9334983-9335093)
chr4 (169-340)||(35133451-35133622)
[»] chr8 (1 HSPs)
chr8 (300-337)||(42323904-42323941)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 29 - 345
Target Start/End: Original strand, 8610529 - 8610837
Alignment:
Q  29 gcattgtgtaattttatatttttcataaaaagcatagcatttaaactatagtatctaaatcaatttaaaaaaccatgcaagaaacnnnnnnnnnnnnnnn 128  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||                    
T  8610529 gcattgtgtaattttatatttttcataaaaagcatagcagataaactatagtatctaaatcaatttaaaaaaccatgcaagaaagaaaaaaaa------- 8610621  T
Q  129 ggataaattagttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaa 228  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||||||||||||    
T  8610622 -gataaattagttaccaaagactgtgttagctgggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaa 8610720  T
Q  229 agaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatca 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8610721 agaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatca 8610820  T
Q  329 attccaatagcaggtcc 345  Q
    |||||||||||||||||    
T  8610821 attccaatagcaggtcc 8610837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 336
Target Start/End: Original strand, 8602702 - 8602898
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||  |||||  ||||||| |||||||| |||||||| || ||||||||| ||||||||| |||| |||  |||||||||||||||||||| |    
T  8602702 ttaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtag 8602801  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaat 336  Q
    ||||||||||||| ||||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| |||||    
T  8602802 ttctgtttccttgatcattgtgaataatctctgccctgttgttttggtcctgccaaacagctacacatgaataggttgttccaaggtcaataccaat 8602898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 140 - 333
Target Start/End: Original strand, 8647669 - 8647862
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| ||||| |  ||||| |||||||| |||||||| || ||||||||  |||||||||||||| | | |||||||||||||||||| || |    
T  8647669 ttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtag 8647768  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
    ||||||||||||| ||||| || || |||||| |||| |||| ||  ||  |||| ||||||||||| ||||| ||||||||||| || |||||    
T  8647769 ttctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctattcc 8647862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 140 - 336
Target Start/End: Original strand, 8591366 - 8591562
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||| ||||| ||||| |||||||| |||||||| || ||||| || ||||||||  ||||||||||||||  ||  ||||||||||||||||| ||      
T  8591366 ttaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaa 8591465  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaat 336  Q
    |||| |||||||| ||||| || || ||||| ||| | |||||||| |||||||| || || ||||||||||| ||||| ||||| |||||||||||    
T  8591466 ttctatttccttgatcattgtgaataatctctgctgtattgttttggtcctgccaaactgctacacatgaatacgttgtgccaaggtcaattccaat 8591562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 138 - 333
Target Start/End: Complemental strand, 7876970 - 7876775
Alignment:
Q  138 agttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagt 237  Q
    ||||||||||||| ||||| | |||||| || ||||| |||||||| || ||||||||  ||||||||||||||   | |||||||||||||||||| ||    
T  7876970 agttaccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgt 7876871  T
Q  238 ggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
     |||||||| ||||| ||||| || || || ||  |||| |||| ||  ||  |||| ||||||||||| ||||| ||||||||||| || |||||    
T  7876870 tgttctgttgccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcc 7876775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 333
Target Start/End: Complemental strand, 10493134 - 10492942
Alignment:
Q  141 taccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggt 240  Q
    |||||||||| |||||  | ||||| |  |||| |||||| || || ||||||||| ||||||||||||||     |||||||||||||||||| || ||    
T  10493134 taccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagt 10493035  T
Q  241 tctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
    ||| |||||||| ||||| || || || ||| |||| | || ||  ||  ||||||||||||||||||| ||||||||||||||||| |||||    
T  10493034 tctatttccttgatcattgtgaataatttcaactctttggtgttcatcaagccatacagcaacacatgagtaggttgttccaagatctattcc 10492942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 3148371 - 3148532
Alignment:
Q  172 agcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctca 271  Q
    ||||||||| || || ||||||||   ||||||||||||| ||| |||||||||||||||||| |||||| |||| ||||| ||||| || || ||||||    
T  3148371 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctca 3148470  T
Q  272 gctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
     |||||||||  |  ||  |||| |||||||| || ||||| ||||||||||| || |||||    
T  3148471 actctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcc 3148532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 346
Target Start/End: Original strand, 8660242 - 8660418
Alignment:
Q  170 gcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct 269  Q
    ||||| ||||| || || ||||||||  |||||||||||||  ||| |||||||||||| ||||| || ||| |||||||||| || || | ||| ||||    
T  8660242 gcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatct 8660341  T
Q  270 cagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtcct 346  Q
    |  |||  ||||  |  ||| |||| ||||||||||| ||||||||||||||||| || |||||||||||| |||||    
T  8660342 cgactcgattgtgattctccagccacacagcaacacacgaataggttgttccaaggtctattccaatagcacgtcct 8660418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 8668510 - 8668626
Alignment:
Q  217 gaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggtt 316  Q
    |||||||||||||||||| ||  ||| ||||||||| ||||| || || |||||| |||| | || ||| ||  |||| |||||||||||||||||||||    
T  8668510 gaaagcaacaaaagaaggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggtt 8668609  T
Q  317 gttccaagatcaattcc 333  Q
    ||||||||||| |||||    
T  8668610 gttccaagatctattcc 8668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 321
Target Start/End: Original strand, 6790408 - 6790559
Alignment:
Q  170 gcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct 269  Q
    ||||||||||  || || ||||||||| |||||||||| ||| | | |||||||||||||||||| |||||| |||| ||||| ||||| || || ||||    
T  6790408 gcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatct 6790507  T
Q  270 cagctctgttgttttgttcctgccatacagcaacacatgaataggttgttcc 321  Q
    || |||| |||| ||  ||  |||| ||| ||||||| ||||| ||||||||    
T  6790508 caactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcc 6790559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 346
Target Start/End: Complemental strand, 29581222 - 29581093
Alignment:
Q  217 gaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggtt 316  Q
    |||||| |||| |||||| |||||||  || ||||| ||||| ||||| |||||||||| |||| | |  |||||||| || || |||||||||||||||    
T  29581222 gaaagctacaacagaaggtgtggttccattgccttgatcattgtggatgatctcagctcggttgatattctcctgccaaactgctacacatgaataggtt 29581123  T
Q  317 gttccaagatcaattccaatagcaggtcct 346  Q
    || || || || ||||| ||||||||||||    
T  29581122 gtgccgaggtcgattccgatagcaggtcct 29581093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 346
Target Start/End: Original strand, 1302309 - 1302485
Alignment:
Q  170 gcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct 269  Q
    ||||| ||||| || || ||||||||| |||||||||||||| | | ||||||||||||||| || || ||| |||| ||||| || || | ||| ||||    
T  1302309 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 1302408  T
Q  270 cagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtcct 346  Q
    |  |||| ||||  |  ||| |||| ||||||||||| ||||| || |||||||| || ||||||| |||| |||||    
T  1302409 ctactctattgtgattctccagccacacagcaacacacgaataagtagttccaaggtctattccaacagcacgtcct 1302485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 13332207 - 13332091
Alignment:
Q  217 gaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggtt 316  Q
    |||||||||||||||||| || ||||| |||||||| ||||| || || |||||| |||| | || ||  ||  |||| |||||||||||||| ||||||    
T  13332207 gaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggtt 13332108  T
Q  317 gttccaagatcaattcc 333  Q
    |||||||| || |||||    
T  13332107 gttccaaggtcgattcc 13332091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 17261360 - 17261496
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| |||||  ||||||||   ||||||||||| || || ||||||||| ||||||||| |||   ||  ||||||||||||||||||||      
T  17261360 ttaccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaa 17261459  T
Q  240 ttctgtttccttgctcattatggattatctcagctct 276  Q
    || |||||||||| ||||| || || |||||| ||||    
T  17261460 ttttgtttccttgatcattgtgaatgatctcaactct 17261496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 273
Target Start/End: Complemental strand, 8635635 - 8635500
Alignment:
Q  138 agttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagt 237  Q
    ||||||||||||| || || | |||||| || | ||| || ||||| || ||||||||  ||||||||||  |  ||| |||||||||| ||||||| ||    
T  8635635 agttaccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgt 8635536  T
Q  238 ggttctgtttccttgctcattatggattatctcagc 273  Q
    | ||||||| ||||||||||| ||||| ||||||||    
T  8635535 gattctgttcccttgctcattgtggatgatctcagc 8635500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 321
Target Start/End: Original strand, 8655375 - 8655498
Alignment:
Q  198 tcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatac 297  Q
    |||||||||||| | ||| ||||||||||| |||||| || ||||| || ||||| ||||| || || |||||| |||| ||||  |  ||  |||| ||    
T  8655375 tcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacac 8655474  T
Q  298 agcaacacatgaataggttgttcc 321  Q
    ||||||||||||||||||||||||    
T  8655475 agcaacacatgaataggttgttcc 8655498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 8560801 - 8560859
Alignment:
Q  278 ttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaat 336  Q
    |||||||| |||||||||||  |||||||||| |||||||||||||| |||||||||||    
T  8560801 ttgttttgctcctgccatactccaacacatgagtaggttgttccaaggtcaattccaat 8560859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 8577335 - 8577453
Alignment:
Q  218 aaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttg 317  Q
    ||||||||| ||||||||||||||||||||||||| ||||| || || || ||  | |  | ||||||||| ||||||||  |||||||||| || || |    
T  8577335 aaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttctacacgatcgttttgttcatgccatactccaacacatgagtaagtcg 8577434  T
Q  318 ttccaagatcaattccaat 336  Q
    | ||||| |||||||||||    
T  8577435 tgccaaggtcaattccaat 8577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 346
Target Start/End: Complemental strand, 29577103 - 29576917
Alignment:
Q  160 tgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatta 259  Q
    ||||||||| ||||| |||||||| || |||| |||  | |||||| |   | ||| |||||| |||| |||||| |||||||| || ||||| |||||     
T  29577103 tgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctattgccttgatcattg 29577004  T
Q  260 tggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtcct 346  Q
    ||||| ||||||||||  |||||  | | |||||| || || || ||||||||||| || ||||| || |||||||| |||||||||    
T  29577003 tggatgatctcagctcgattgttacgctgctgccaaactgctacgcatgaataggtcgtgccaaggtcgattccaatggcaggtcct 29576917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 333
Target Start/End: Original strand, 8582651 - 8582824
Alignment:
Q  160 tgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatta 259  Q
    |||||| ||||||||||||||||| || ||||||||  |||| ||||||  |  ||  ||||||||| ||||||| || ||| |||||||||| |||||     
T  8582651 tgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattg 8582750  T
Q  260 tggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
    || || || ||  | |  | |||||| |||||||| ||  |||||||||| |||||||| ||||| ||||||||    
T  8582751 tgtatgatttccacacgatcgttttgctcctgccacactccaacacatgagtaggttgtaccaaggtcaattcc 8582824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 8572587 - 8572676
Alignment:
Q  169 agcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatt 258  Q
    ||||||||||||||| || ||||||||| |||| ||||||  |  ||  ||||||||| |||| ||||| |||||||||||||| |||||    
T  8572587 agcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcatt 8572676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 333
Target Start/End: Complemental strand, 8584611 - 8584477
Alignment:
Q  199 caacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccataca 298  Q
    ||||||||||||| | |  ||||||||||| ||||| ||| || | || ||||  || || || || |||||| ||||||| |||| ||||  ||| |||    
T  8584611 caacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaaca 8584512  T
Q  299 gcaacacatgaataggttgttccaagatcaattcc 333  Q
     ||||||| ||||||||||||||||| || |||||    
T  8584511 ccaacacaagaataggttgttccaaggtctattcc 8584477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 333
Target Start/End: Original strand, 8630255 - 8630389
Alignment:
Q  199 caacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccataca 298  Q
    ||||||||||||| | |  |||||||| || ||||| ||| || | || ||||  ||||| || || |||||| ||||||| |||| ||||  ||| |||    
T  8630255 caacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgccttcatcattgtgaataatctcaactctgttcttttcttccaaccaaaca 8630354  T
Q  299 gcaacacatgaataggttgttccaagatcaattcc 333  Q
     ||||||| ||||||||||||||||| || |||||    
T  8630355 ccaacacaagaataggttgttccaaggtctattcc 8630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 309
Target Start/End: Original strand, 17269068 - 17269237
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| |||||  |||||||    ||||||||||| || || | ||||||| | ||||||| |||   ||  |||||||||||||| ||||| |    
T  17269068 ttaccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtag 17269167  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatga 309  Q
    || |||| ||||| ||||| || || |||||| ||||   || || ||| ||||| ||||||||||||||    
T  17269168 ttttgttgccttgatcattgtgtataatctcaactctaccgtgttcttcatgccacacagcaacacatga 17269237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 333
Target Start/End: Complemental strand, 16656700 - 16656541
Alignment:
Q  174 cttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagc 273  Q
    ||||||| || || ||||||||| ||||||||||||||  || |||||||||||||||||| || ||||||||||| || ||||| || || ||||| ||    
T  16656700 cttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgc 16656601  T
Q  274 tctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
    ||||||||   | |||  ||| ||||||||||||||||| ||||||||||| || |||||    
T  16656600 tctgttgtgacggtccatccacacagcaacacatgaataagttgttccaaggtctattcc 16656541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 346
Target Start/End: Complemental strand, 12258019 - 12257842
Alignment:
Q  169 agcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatc 268  Q
    |||||||||||| || || ||||||||  |||||||||||||   ||  ||||||||| ||||||| || |||||||||||||| || || || || |||    
T  12258019 agcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatc 12257920  T
Q  269 tcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtcct 346  Q
    |||||||     | |||||||||||| |||||||| |||||||| ||||| ||||| |||||||| || ||| |||||    
T  12257919 tcagctcgacaatattgttcctgccaaacagcaacgcatgaatacgttgtgccaaggtcaattcctatcgcaagtcct 12257842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 324
Target Start/End: Original strand, 12235766 - 12235950
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| |||||    ||||| |||||||||||||| || || ||||||||  ||||||| ||||   | | |||||||||||||||||| || |    
T  12235766 ttaccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttg 12235865  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaag 324  Q
    |||| || ||||| || || || || |||||| |||    ||  |||||||||||||| |||||||||||||| ||||| |||||    
T  12235866 ttctattgccttgatcgttgtgaatgatctcaactcgagagtgctgttcctgccatactgcaacacatgaatatgttgtaccaag 12235950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 333
Target Start/End: Complemental strand, 12244508 - 12244344
Alignment:
Q  169 agcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatc 268  Q
    ||||||||||||||| || ||||||||  | |||||||||||  ||| |||||||||| ||||||| || |||||||| || || || || || || ||     
T  12244508 agcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatt 12244409  T
Q  269 tcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
    ||| | |    || ||||||||||||||| |||||||||||||| ||||| ||||| || |||||    
T  12244408 tcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcc 12244344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 333
Target Start/End: Original strand, 43626336 - 43626481
Alignment:
Q  188 gcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgtt 287  Q
    ||||||||  |||||||||| ||   || ||||| |||||||||||| || |||||||||||||| ||||| ||||| |||||  ||||  ||||||  |    
T  43626336 gcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctgttttcat 43626435  T
Q  288 cctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
    |  |||| ||||||| ||| ||||| ||||||||||| || |||||    
T  43626436 caagccacacagcaatacaagaatacgttgttccaaggtctattcc 43626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 333
Target Start/End: Original strand, 7543245 - 7543438
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||| |||||    ||||| |||||||||||||| || ||   ||||||| ||||||| ||||   | | |||||||||||||||||| || |    
T  7543245 ttaccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttg 7543344  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
    ||||||| ||||| || || || || || ||| |||  | || ||| ||||||||||| |||||||| || || ||||| ||||| || |||||    
T  7543345 ttctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttgtgccaaggtctattcc 7543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 321
Target Start/End: Complemental strand, 16661171 - 16661019
Alignment:
Q  169 agcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatc 268  Q
    |||||||||||  || || ||| |||||  |||||||||| || |||  ||||||||||||||||| ||  || |||| ||||  || || ||||| |||    
T  16661171 agcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatc 16661072  T
Q  269 tcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttcc 321  Q
    ||| ||||||| || | ||||  ||| |||||||||||||| || ||||||||    
T  16661071 tcaactctgtttttctcttccaaccaaacagcaacacatgagtatgttgttcc 16661019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 333
Target Start/End: Original strand, 28220950 - 28221108
Alignment:
Q  175 ttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagct 274  Q
    ||||||||| || ||||| ||  ||||||||| |||| | | ||||||||||||||||||||| ||| |||| ||||| ||||| || || |||||| |     
T  28220950 ttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaacc 28221049  T
Q  275 ctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattcc 333  Q
    || |||| ||  || ||||| ||||||||||||||||| |||||||||||||| |||||    
T  28221050 ctattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctattcc 28221108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 340
Target Start/End: Original strand, 15596057 - 15596227
Alignment:
Q  170 gcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct 269  Q
    ||||||||| | || || ||||||||  ||||||||||||||  || ||||| |||||||||||| ||  ||||||||||||| ||||| ||||| ||||    
T  15596057 gcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatct 15596156  T
Q  270 cagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagca 340  Q
    |  |||| || | ||  ||  |||| ||||||||||| ||||| ||||||||||| || ||||||||||||    
T  15596157 cgactctattctgttcatcaagccacacagcaacacaagaatacgttgttccaaggtctattccaatagca 15596227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 346
Target Start/End: Complemental strand, 34465362 - 34465176
Alignment:
Q  160 tgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatta 259  Q
    |||||| | ||||| |||||| || || |||| |||| |||| |||||||||  ||  ||||||||||||||||| |||||| |||| ||||| |||||     
T  34465362 tgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattg 34465263  T
Q  260 tggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtcct 346  Q
    |  || |||||  ||||  ||| ||||||||||||||| ||||||||||| |||||||| ||||| || ||||| | |||| |||||    
T  34465262 tcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagcacgtcct 34465176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 346
Target Start/End: Complemental strand, 4677616 - 4677468
Alignment:
Q  198 tcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatac 297  Q
    |||||||||||||| |||  ||||||||||||||||| || ||| |||| ||||| ||||| |  || |||||  |||||||||  |  ||| |||| ||    
T  4677616 tcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacac 4677517  T
Q  298 agcaacacatgaataggttgttccaagatcaattccaatagcaggtcct 346  Q
    ||||||||||||||| || ||||||||||| ||||| | |||| |||||    
T  4677516 agcaacacatgaataagtagttccaagatctattcccacagcacgtcct 4677468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 52549088 - 52549059
Alignment:
Q  283 ttgttcctgccatacagcaacacatgaata 312  Q
    ||||||||||||||||||||||||||||||    
T  52549088 ttgttcctgccatacagcaacacatgaata 52549059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 327
Target Start/End: Complemental strand, 9323198 - 9323011
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||  |||||  | ||||| | ||||| |||||| || || ||||||||  |||||||||| |||     |||||||||||||||||| || |    
T  9323198 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9323099  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatc 327  Q
    ||| ||||||||| ||||| || || |||||| |||| | || ||| ||  |||| ||||||||||| ||||||||||||||||||||    
T  9323098 ttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatc 9323011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 327
Target Start/End: Complemental strand, 9377677 - 9377490
Alignment:
Q  140 ttaccaaagactgtgttagctgggtttgaagcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtgg 239  Q
    ||||||||||  |||||  | ||||| | ||||| |||||| || || ||||||||  |||||||||| |||     |||||||||||||||||| || |    
T  9377677 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9377578  T
Q  240 ttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatc 327  Q
    ||| ||||||||| ||||| || || |||||| |||| | || ||| ||  |||| ||||||||||| ||||||||||||||||||||    
T  9377577 ttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaagatc 9377490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 217 - 327
Target Start/End: Complemental strand, 9335093 - 9334983
Alignment:
Q  217 gaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggtt 316  Q
    |||||||||||||||||| || |||| ||||||||| ||||| || || |||||| |||| | || ||| ||  |||| ||||||||||| |||||||||    
T  9335093 gaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggtt 9334994  T
Q  317 gttccaagatc 327  Q
    |||||||||||    
T  9334993 gttccaagatc 9334983  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 340
Target Start/End: Original strand, 35133451 - 35133622
Alignment:
Q  169 agcagcttgatttttcgccgcatcaccggtcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatc 268  Q
    |||||||||||| || || ||||||||| |||||||||||||   || |||||||| | ||||||| || ||| |||| | ||| || || || || ||     
T  35133451 agcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatt 35133550  T
Q  269 tcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagca 340  Q
    ||  |||  | || |||||| |||||||| |||||||||||||| |||||||| || || ||||| ||||||    
T  35133551 tcgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattccgatagca 35133622  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 42323941 - 42323904
Alignment:
Q  300 caacacatgaataggttgttccaagatcaattccaata 337  Q
    |||||||||||||||||||||||||||| || ||||||    
T  42323941 caacacatgaataggttgttccaagatctatcccaata 42323904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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