View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1895_low_7 (Length: 314)
Name: NF1895_low_7
Description: NF1895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1895_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 9909652 - 9909346
Alignment:
| Q |
1 |
tgggtagattatactgtcactgaaccaataatttgatttccatgctgttatttca---ttcaccaatgtcgtattgattttaatttaatattacgtagga |
97 |
Q |
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| T |
9909652 |
tgggtaggatatactgtcactgaaccaataatttgatttccatgctgtcatt-cacggttcaccaatgtcgtattgattttaatttaatattacgtagga |
9909554 |
T |
|
| Q |
98 |
atatgcacttactttgattttaaacaatcatacacatgnnnnnnnnnnnnnnnn-ggagaggatcatacacatgggtt-----acgatgtcacattgcta |
191 |
Q |
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| T |
9909553 |
atatgcacttactttcattttaaacaatcatacacatgttttttttgttttttttggagaggatcatacacatgggttgggttacgatgtcacattgcta |
9909454 |
T |
|
| Q |
192 |
ccaaattcatggaaacgtgtgtgttggggatagtcttagtcattgattggtcacgtaccctatttcaacattcatcacagtatataatcattggtttgct |
291 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9909453 |
ccaaatttatggaaacgtgtgtgttggggatagtcttagtcattgattggtcacgtaccctatttcaacattcatcacagtatataatcattggtttgct |
9909354 |
T |
|
| Q |
292 |
aatgattc |
299 |
Q |
| |
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|||||||| |
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| T |
9909353 |
aatgattc |
9909346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 9862931 - 9862990
Alignment:
| Q |
152 |
ggagaggatcatacacatgggttacgatgtcacattgctaccaaattcatggaaacgtgt |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |
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| T |
9862931 |
ggagaggatcatacacatgtgttacgatgtcacattgctaccaaatttaaggaaacgtgt |
9862990 |
T |
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