View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_high_11 (Length: 360)
Name: NF18960_high_11
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 32833723 - 32834054
Alignment:
| Q |
11 |
cacagatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833723 |
cacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
32833822 |
T |
|
| Q |
111 |
tcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctctggatcaaagaaacctgcc |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
32833823 |
tcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgccaccggatcaaagaaacctgcc |
32833922 |
T |
|
| Q |
211 |
tccactacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcgggaaaacgtgtctccggcggactgacaaaactactctctgaaacgggaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833923 |
tccactacgggacaagatgcctctgcaaccaagcaaactccctcctcatcgggaaaatgtgtctccggcggactgacaaaactactctctgaaacgggaa |
32834022 |
T |
|
| Q |
311 |
aagatgcctctacagcagaagaaggagcctct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
32834023 |
aagatgcctctacagcagaagaaggagcctct |
32834054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 32840137 - 32840468
Alignment:
| Q |
11 |
cacagatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840137 |
cacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
32840236 |
T |
|
| Q |
111 |
tcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctctggatcaaagaaacctgcc |
210 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32840237 |
tcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctccggatcaaagaaacctgcc |
32840336 |
T |
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| Q |
211 |
tccactacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcgggaaaacgtgtctccggcggactgacaaaactactctctgaaacgggaa |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840337 |
tccagtacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcggcaaaacgtgtctccggcggactgacaaaactactctctgaaacgggaa |
32840436 |
T |
|
| Q |
311 |
aagatgcctctacagcagaagaaggagcctct |
342 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
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| T |
32840437 |
aagatgcctctacagcagaagaaggtgcctct |
32840468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 29605323 - 29605472
Alignment:
| Q |
11 |
cacagatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaaga |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||| |
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| T |
29605323 |
cacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactgattaaccaaagaaacctcaaga |
29605422 |
T |
|
| Q |
111 |
tcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccac |
160 |
Q |
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|| ||||||| |||||||| ||||||||| |||||| |||||||||| |
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| T |
29605423 |
tcttccatccaatcccaaaaatcaacctccatctgattcacaacaaccac |
29605472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 28405835 - 28405748
Alignment:
| Q |
25 |
aataacatttcacattttccatattctcttttctcagaaagaa-agaaacctctcaacatgactcaatcaccaaagaactctcaagat |
111 |
Q |
| |
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||||||| |||||||||| ||| || |||| | |||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |
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| T |
28405835 |
aataacacttcacattttgtatactcaattttgtgagaaagaagagaaacctcttaacatggctcaatcaccaaagaacgatcaagat |
28405748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 19946924 - 19946835
Alignment:
| Q |
19 |
aatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagat |
111 |
Q |
| |
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||||| |||||||||||||||||| |||| |||| || | ||||||||| ||| |||||||||||||| | ||| |||||||| | |||||| |
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| T |
19946924 |
aatcacaataacatttcacatttttcata--ctctcttgtgagaaagaaa-aaaactctcaacatgactgattcagcaaagaacacccaagat |
19946835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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