View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_high_14 (Length: 320)
Name: NF18960_high_14
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 44670321 - 44670036
Alignment:
| Q |
20 |
cataagcactggattttaaaatgtagttccatcaaactacaatattgttgattgaatttgcttcaatcttagttcaacatggctttggatagcatttgtt |
119 |
Q |
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| T |
44670321 |
cataagcactggattttaaaatgtagttccatcaaactacaaaattgttgattgaatttgcttcaatcttagttcaacatggctttggatagcatttgtt |
44670222 |
T |
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| Q |
120 |
tgcaattaaaattgtcttgtatatgataaaacagggcaattaatgaaaaactgaactcaaacaatatttaatttcacagaatttaaacacagtttgtctg |
219 |
Q |
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| T |
44670221 |
tgcaattaaaattgtcttatatatgataaaacagggcacttaatgaaaaactgaactcaaacaatatttaatttcacagaatttaaacacagtttgtctg |
44670122 |
T |
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| Q |
220 |
cataaggaactttattggagtctcccttttgtaattatctcatgagatttatcctacttcgttttcaatcatgctgctgaattgac |
305 |
Q |
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| T |
44670121 |
cataaggaactttattggagtctcccttttgtaattatctcgtgagatttatcctacttcgttttcaatcaagctgctgaattgac |
44670036 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 17390005 - 17390069
Alignment:
| Q |
71 |
ttgaatttgcttcaatcttagttcaacatggctttggatagcatttgtttgcaattaaaattgtc |
135 |
Q |
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| T |
17390005 |
ttgaatttgctgccatcttagttcaacatggctcttgataccatttggtggcaattaaatttgtc |
17390069 |
T |
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