View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_high_18 (Length: 290)
Name: NF18960_high_18
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 42855202 - 42854928
Alignment:
| Q |
1 |
gaaaattaaaattaaggaagacttaaatccctcccaatagtgnnnnnnnntgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42855202 |
gaaaattaaaattaaagaagacttaaatccctcccaatagtgaaaaaaaatgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
42855103 |
T |
|
| Q |
101 |
ctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaa |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42855102 |
ctcctccaagtgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaa |
42855003 |
T |
|
| Q |
201 |
atgtaaaatatctattattgcggatcgacaagaatgagaaagaataccat-atatatcttatgcatatattatat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
42855002 |
atgtaaaatatctattattgcggatcgacaagaatgagaaagaataccatgatatatcttatgcacatattatat |
42854928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 42848657 - 42848412
Alignment:
| Q |
2 |
aaaattaaaattaaggaagacttaaatccctcccaatagtgnnnnnnnn-tgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgcc |
100 |
Q |
| |
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||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42848657 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaagaaaatgaaaatgagatcaagaaaaaaccatagtgagagaagcttttaacatgcc |
42848558 |
T |
|
| Q |
101 |
ctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctgatgccgttgcattaagatcacaaagctggaagttaaa |
200 |
Q |
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| T |
42848557 |
ctcctccaagcgttttgaaagatccttaatcctccttctctgcatttcattagttggctgttgatgcagttgcattaagatcacaaagctggaaggtaaa |
42848458 |
T |
|
| Q |
201 |
atgtaaaatatctattattgcggatcgacaagaatgagaaagaata |
246 |
Q |
| |
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||||||| ||| ||||||||| |||||||||||||| |||||||| |
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| T |
42848457 |
atgtaaagtatttattattgctaatcgacaagaatgaaaaagaata |
42848412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 42860864 - 42860697
Alignment:
| Q |
54 |
aaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaa |
153 |
Q |
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||||||||||||||||||||| | ||||||| |||||| |||| |||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||| |
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| T |
42860864 |
aaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcgtccaggcgttttgaaagatctgtaatcctccctttctgcatttcagtaa |
42860765 |
T |
|
| Q |
154 |
ttggctgctgatgccgttgcattaagatcacaaagctgg-aagttaaaatgtaaaatatctattattg |
220 |
Q |
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| T |
42860764 |
ttggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42860697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 42856787 - 42856620
Alignment:
| Q |
54 |
aaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaa |
153 |
Q |
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||||||||||||||||||||| | ||||||| |||||| |||| |||||| |||| |||||||||||||| ||||| ||| ||||||||||||| ||| |
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| T |
42856787 |
aaatgagatccagaaaaaaccttcgtgagagcagctttgaacaggccctcatccaggcgttttgaaagatctgtaatcttccctttctgcatttcagtaa |
42856688 |
T |
|
| Q |
154 |
ttggctgctgatgccgttgcattaagatcacaaagctgg-aagttaaaatgtaaaatatctattattg |
220 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
42856687 |
ttggctgttgatgccgttgcattaagatcacaaagctggaaaggtaaaatgtaaaatatctattattg |
42856620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 42853305 - 42853108
Alignment:
| Q |
8 |
aaaattaaggaagacttaaatccctcccaatagtgnnnnnnnn-tgaaaatgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctc |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | || ||| ||||||||||||||| ||| ||||||| ||||||||| ||||||||| |
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| T |
42853305 |
aaaattaaggaagatttaaatccctcccaatagtgaaaagaaaattaacatgggatccagaaaaaaccttagagagagaatcttttaacaggccctcctc |
42853206 |
T |
|
| Q |
107 |
caagcgttttgaaagattcttaatcctccttttctgcatttcattaattggctgctg-atgccgttgcattaagatcacaaagctggaagttaaaatgt |
204 |
Q |
| |
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|| || ||||||||||| ||| ||||||||||||||||||||| ||| ||| | || ||||||||||| ||| ||| || ||||||||| |||||||| |
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| T |
42853205 |
caggcattttgaaagatccttgatcctccttttctgcatttcactaactgg-tattgcatgccgttgcaataacatctcatagctggaaggtaaaatgt |
42853108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42855248 - 42855207
Alignment:
| Q |
1 |
gaaaattaaaattaaggaagacttaaatccctcccaatagtg |
42 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42855248 |
gaaaatttaaattaaggaagacttaaatccctcccaatagtg |
42855207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 27383 - 27218
Alignment:
| Q |
56 |
atgagatccagaaaaaaccatagtgagagaagcttttaacatgccctcctccaagcgttttgaaagattcttaatcctccttttctgcatttcattaatt |
155 |
Q |
| |
|
|||| |||||||||||||| ||| ||| | |||||||||||||||||||| |||||||| ||||| ||||||||||||||| || |||||| ||||| |
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| T |
27383 |
atgatatccagaaaaaaccttagaaggagcattttttaacatgccctcctccaggcgttttgcaagatccttaatcctccttttttgaatttcactaatt |
27284 |
T |
|
| Q |
156 |
ggctgctgatgccgttgcattaagatcacaaagctggaagttaaaatgtaaaatatctattattgc |
221 |
Q |
| |
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||||||||||||||| | | ||| || || ||||| || ||||||||||||||| |||||||| |
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|
| T |
27283 |
ggctgctgatgccgtcgaaataacgtctcacagctgcaatgtaaaatgtaaaatattaattattgc |
27218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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