View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_high_3 (Length: 457)
Name: NF18960_high_3
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 42183835 - 42183606
Alignment:
| Q |
1 |
tgctattgttatttgtgtgaagttccacaggctttcttgaacggggacgacctctatgcatatgcctttcacagtacctgttattaggagctacatctct |
100 |
Q |
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| T |
42183835 |
tgctattgttatttgtgtgaagttccacaggctttcttgaacggggacgacctctatgcatatgcctttcacaatacctgttattaagagctacatcttt |
42183736 |
T |
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| Q |
101 |
agaacatctccattttttaccatctgttcttttgcacctaccagcctctggatcagtattgttcctatttgatagcctcagattgaaaccaccatccact |
200 |
Q |
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| T |
42183735 |
agaacatctccattttttaccatctgttcttttgcacctaccagcctctggatcagtattgttcctatttgatagcctcaaattgaaaccaccatccact |
42183636 |
T |
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| Q |
201 |
gcttcaacaagttcaaatttcaagaaacag |
230 |
Q |
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| T |
42183635 |
gcttcaacaagttcaaatttcaagaaacag |
42183606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 331 - 438
Target Start/End: Complemental strand, 42183477 - 42183370
Alignment:
| Q |
331 |
gttaatgggctatgatattttctttgtctgtacatcaaaatatgaaattaaggaagaagagagaaaagggccatacatgaaagaagatgagaaggaacag |
430 |
Q |
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| T |
42183477 |
gttaatgggctatgttattttctttgtctgtacatcaaaatatgaaattaaggaagaagagagaaaagggccatacatgaaagaagatgagaaggaacag |
42183378 |
T |
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| Q |
431 |
gaagtgaa |
438 |
Q |
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| T |
42183377 |
gaagtgaa |
42183370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 42183574 - 42183528
Alignment:
| Q |
234 |
gccacacattgattcaatgacaaaaggtaaatagaatgaaaagtggt |
280 |
Q |
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| T |
42183574 |
gccacacattgattcaatgacaaaaggtaaatagaatgaaaagtggt |
42183528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 11196902 - 11196783
Alignment:
| Q |
23 |
ttccacaggctttcttgaacggggacgacctctatgcatatgcctttcacagtacctgttattaggagctacatctctagaacatctccattttttacca |
122 |
Q |
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| T |
11196902 |
ttccacaggctttcttgaacggtaacgacgtcgaatcatatgccggtcacagtacttagaatcaggatgagcatccctagcacatctccattttttacca |
11196803 |
T |
|
| Q |
123 |
tctgttcttttgcacctacc |
142 |
Q |
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| T |
11196802 |
tctgttcttctacacctacc |
11196783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 7246546 - 7246602
Alignment:
| Q |
21 |
agttccacaggctttcttgaacggggacgacctctatgcatatgcctttcacagtac |
77 |
Q |
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| T |
7246546 |
agttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtac |
7246602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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