View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_high_9 (Length: 401)
Name: NF18960_high_9
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 33825734 - 33826112
Alignment:
| Q |
18 |
acctaatgcaaaaccagtcttttgaaagagtttcctcaaacggcattacagaatattcttgctgttttcaattcctagtgaagagaaagaatccactttc |
117 |
Q |
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| T |
33825734 |
acctaatgcaaaaccagtcttttgaaagagtttcctcaaacggcattacagaatattcttgctgttttcaattcctagtgaagagaaagaatccactttc |
33825833 |
T |
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| Q |
118 |
actgaacttccgctctgcagctacttctgtttctcagctatgttgtcccactaaattgaattaagagaaatgatatttgtgtgacaaattttgaaacatt |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
33825834 |
actgaacttccgctctgcagctacttgtgtttctcagctatgttgtcccgctaaattgaatt-agagaaatgatatttgtgggacaaattttgaaacatt |
33825932 |
T |
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| Q |
218 |
tctctt-gtaatttcattgtgttcttactctggttatctctcttttgtttttgtctc----nnnnnnnnnnnnnnnggagaaagaaggttatcctcaaat |
312 |
Q |
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|||||| |||||||||||| ||||||||||| ||||||||||||||||||| |||| ||| ||||||||||||| ||||| |
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| T |
33825933 |
tctcttagtaatttcattgcgttcttactctctttatctctcttttgtttttatctcaaaaaaaaaaaaaaaaaaaagaggaagaaggttatccccaaat |
33826032 |
T |
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| Q |
313 |
tattacaaaatgatttgacaaatatcattactctaaatttcattatcacacaccatctataaatagatgtcttggttgtc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
33826033 |
tattacaaaatgatttgacaaatatcattactctaaatttcattatcacacaccatctataaatagatattttggttgtc |
33826112 |
T |
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