View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_1 (Length: 768)
Name: NF18960_low_1
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 594; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 123 - 751
Target Start/End: Original strand, 40752740 - 40753369
Alignment:
| Q |
123 |
catatacaaataagtgaacctttcattggaaaaaccttagatgagctgtgtttgaacatatttgagaaaaccaaggtcggattgtgcttgaaacatgatt |
222 |
Q |
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| T |
40752740 |
catatacaaataagtgaacctttcattggaaaaaccttagatgagctgtgtttgaacatatttgagaaaaccaaggtcggattgtgcttgaaacatgact |
40752839 |
T |
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| Q |
223 |
ttggttctaaactaaaaccttggagtgtggaaataaggaaaaaaggttgtttttctgttgatttgggccatggtttgcaaacaacaatccacaaatgcat |
322 |
Q |
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| T |
40752840 |
ttggttctaaactaaaaccttggagtgtggaaatgaggaaaaaaggttgtttttctgttgatttgggccatggtttgcaaacaacaatccacaaatgcat |
40752939 |
T |
|
| Q |
323 |
tgttttgattggacgtaagcaactgtaatatgcaacaagtgcattctgtaacacccatttattgaagaaattcatctacattccaactaaatcaagtgaa |
422 |
Q |
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| T |
40752940 |
tgttttgattgaacgtaagcaactgtaatatgcaacaagtgcattctttaacacccatttattgaagaaattcatctacattccaactaaatcaagtgaa |
40753039 |
T |
|
| Q |
423 |
tcccacgtcatcttcatccaataaaaagattgtgttgctagtatttctaacatgaaactcatttaaaaaagcaatatcatgaagtatatataactcaaaa |
522 |
Q |
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| T |
40753040 |
tcccacgtcatcttcatccaataaaaagattgagttgctagtatttctaacatgaaactcatttaaaaaagcaatatcatgaagtgtatataactcaaaa |
40753139 |
T |
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| Q |
523 |
ttcgtcattaatat-aaagagaaaaagaaatactaatgagaggggagacaatcttgaatgatacagcaaaatatgtttaacaagaagctaaaacagacta |
621 |
Q |
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| T |
40753140 |
ttcgtcattaatataaaagagaaaaaggaatactaatgagaggggagacaatcttgaatgatacagcaaaatatgtttaacaagaagctaaaacagacta |
40753239 |
T |
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| Q |
622 |
agaccaacattacctcttgtattttgttttctgatcgggcaagcaacttgtactgattctcaaatatggatgccatataaacctggaacaaaatttggtt |
721 |
Q |
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| T |
40753240 |
agaccaacattacctcttgtattttgttttctgatcgggcaagcaacttgtactgattctcaaatatggatgccatataaacctggaacaaaatttggtt |
40753339 |
T |
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| Q |
722 |
tgcatgcacataaatcaagaacttgagttt |
751 |
Q |
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| T |
40753340 |
tgcatgcacataaatcaagaacttgagttt |
40753369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 40752627 - 40752684
Alignment:
| Q |
10 |
attatactatgcatgagtatgaaaataggtgatttccatcaatagccaaccagcagtt |
67 |
Q |
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| T |
40752627 |
attatactatgcatgagtatgaaaataggtgatttccatcaatagccaaccagcagtt |
40752684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 581 - 745
Target Start/End: Complemental strand, 25019206 - 25019038
Alignment:
| Q |
581 |
gatacagcaaaatatgtttaacaagaagctaaaacagact--aagacca--acattacctcttgtattttgttttctgatcgggcaagcaacttgtactg |
676 |
Q |
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|||||| |||||| ||||| |||||||||||||| ||||| || || | ||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
25019206 |
gatacaacaaaatctgtttgacaagaagctaaaatagactctaacactataacattacctcttgtattttattttctgatcgggcaagcaacttgtaatg |
25019107 |
T |
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| Q |
677 |
attctcaaatatggatgccatataaacctggaacaaaatttggtttgcatgcacataaatcaagaactt |
745 |
Q |
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||||||||| ||| ||| |||| |||||||||||||| ||| ||||| ||||| ||||||||||||||| |
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| T |
25019106 |
attctcaaagatgcatgacataaaaacctggaacaaattttagtttggatgcagataaatcaagaactt |
25019038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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