View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_11 (Length: 362)
Name: NF18960_low_11
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 25249213 - 25249391
Alignment:
| Q |
12 |
tatactcaataactattgtgtttttcggccgacgagaaacaaaatttcact-tttctctagttaaccgtaaatactgagacattcgtgaaaaatactctc |
110 |
Q |
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| T |
25249213 |
tatactcaatacctattgtgtttttcggccgaccagaaacaaaatttcactatttcactagttaacggtaaatcatgagacattcgtgaaaaatactctc |
25249312 |
T |
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| Q |
111 |
acgataaacaacattgccctttcggccgatcaaaataagatttcaatatttaaccataaatcatgagatattcgtgaaaa |
190 |
Q |
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| T |
25249313 |
atgataaaca-cattgccctttcggccgatcaaaacaagatttcaatatttaaccataaatcatgagattttcgtgaaaa |
25249391 |
T |
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Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 25249416 - 25249543
Alignment:
| Q |
219 |
gataaatagcattgcgctttgtattttgacatacaataaatttcagcatacttataaaagggaaataatgtaacaaaacaacagagtttcattgtacgtc |
318 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
25249416 |
gatacatagcattgccctttgtattttgacatacaataaatttcagcatacttataaaagggaaatgatgtaacaaaacaacagagtttcattgtatgtc |
25249515 |
T |
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| Q |
319 |
agtatcaaacttgtttacaccaataatg |
346 |
Q |
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| T |
25249516 |
agtatcaaacttgtttacaccaataatg |
25249543 |
T |
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