View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_18 (Length: 298)
Name: NF18960_low_18
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_18 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 42855500 - 42855203
Alignment:
| Q |
1 |
acagaaaataagagtaatgcgttacaccacaccttggttcttacatcgttgtgggctttggaaattccaagcatagttgctcgtcggaggaaaatggata |
100 |
Q |
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| T |
42855500 |
acagaaaataagagtaatgcgttacaccacaccttggtgcttacatcgttgtgggctttggaacttccaagcatagttgctcgtcggaggaaaatggata |
42855401 |
T |
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| Q |
101 |
aatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaataatagtctttgaaattaaggaggaagaag |
200 |
Q |
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| T |
42855400 |
aatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaataatagtctttgaaattaaggaggaagaag |
42855301 |
T |
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| Q |
201 |
tttgaaagcaccttgtaatttattacttctagaaacataaatctgagtattagaaaatttaaattaaggaagacttaaatccctcccaatagtgaaaa |
298 |
Q |
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| T |
42855300 |
tttgaaagcaccttgtaatttattacttctagaaacataaatctgagtattagaaaatttaaattaaggaagacttaaatccctcccaatagtgaaaa |
42855203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 42857093 - 42856895
Alignment:
| Q |
1 |
acagaaaataagagtaatgcgttacaccacaccttggttcttacatcgttgtgggctttggaaattccaagcatagttgctcgtcggaggaaaatggata |
100 |
Q |
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||||||||||||||| ||| |||||| ||||||||||| |||||| ||||| ||||||||| ||||| ||||||||||| ||||||||||| | |||| |
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| T |
42857093 |
acagaaaataagagtgatgtgttacaacacaccttggtgcttacagttttgtgagctttggaacttccatgcatagttgcttgtcggaggaaattagata |
42856994 |
T |
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| Q |
101 |
aatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaataatagtctttgaaattaaggaggaagaa |
199 |
Q |
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| T |
42856993 |
aacgactctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtcaacacaataacagtctttgaatttaaggaggaagaa |
42856895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 298
Target Start/End: Complemental strand, 42861100 - 42860873
Alignment:
| Q |
71 |
gcatagttgctcgtcggaggaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaa |
170 |
Q |
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||||||||||| ||||||||||| | |||||| |||||||||||||| |||| |||||||||| | ||| || || |||||||||||| ||||||||| |
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| T |
42861100 |
gcatagttgcttgtcggaggaaattagataaacgactctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtcaacacaa |
42861001 |
T |
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| Q |
171 |
taatagtctttgaaattaaggaggaagaa---gtttgaaagcaccttgtaatttattacttctagaaacataaatc-tgagtattagaaaatttaaatta |
266 |
Q |
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||| |||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |||| |||||||| |||||||| | |||| |||| | |
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| T |
42861000 |
taacagtctttgaatttaaggaggaagaacatgtttgaagacaccttg----ttattacttccagaatcataaatcttgagtatttaataattaaaatca |
42860905 |
T |
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| Q |
267 |
aggaagacttaaatccctcccaatagtgaaaa |
298 |
Q |
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| T |
42860904 |
aggaaagtttaaatccattgcaatagtgaaaa |
42860873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 42855203 - 42855157
Alignment:
| Q |
252 |
agaaaatttaaattaaggaagacttaaatccctcccaatagtgaaaa |
298 |
Q |
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| T |
42855203 |
agaaaattaaaattaaagaagacttaaatccctcccaatagtgaaaa |
42855157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 42853304 - 42853267
Alignment:
| Q |
261 |
aaattaaggaagacttaaatccctcccaatagtgaaaa |
298 |
Q |
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| T |
42853304 |
aaattaaggaagatttaaatccctcccaatagtgaaaa |
42853267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 42848657 - 42848613
Alignment:
| Q |
254 |
aaaatttaaattaaggaagacttaaatccctcccaatagtgaaaa |
298 |
Q |
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|||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
42848657 |
aaaattaaaattaaggaagacttgaatacctcccaatagtgaaaa |
42848613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 42853458 - 42853362
Alignment:
| Q |
72 |
catagttgctcgtcggaggaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacac |
168 |
Q |
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| T |
42853458 |
catagctgcttgtcggaggaaattagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacac |
42853362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 27605 - 27482
Alignment:
| Q |
72 |
catagttgctcgtcggaggaaaatggataaatgactctctagtgtacgcaagctcatgtagtccttctacaatacgagtcgaaaacatgttcaacacaat |
171 |
Q |
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|||||||||| |||||||||||| |||||| || ||||||||| |||| ||||||| |||| ||| || || |||||||||||| |||||||||| |
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| T |
27605 |
catagttgcttgtcggaggaaaagagataaacgagcctctagtgtttccaagttcatgtactcctcctaaaagacaagtcgaaaacattgtcaacacaat |
27506 |
T |
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| Q |
172 |
aatagtctttgaaattaaggaggaag |
197 |
Q |
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| T |
27505 |
a--agtctttgaaattaaggaggaag |
27482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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