View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_2 (Length: 702)
Name: NF18960_low_2
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 18 - 702
Target Start/End: Original strand, 53044084 - 53044764
Alignment:
| Q |
18 |
tgaagatggtcgtggcaaggtagcaggtgagttttaaataaactttaatgtaactagcctgaataggnnnnnnnnnnngttgttgaggggtattctgaat |
117 |
Q |
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| T |
53044084 |
tgaagatggccgtggcaaggtagcaggtgagttttaaataaactttaatgtaactagcctgaataggtttttttttt--ttgttgaggggtattctgaat |
53044181 |
T |
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| Q |
118 |
aggtttcttcagcatcattttccctactgttatcttattctaatattgtgtcttgtttccagcacttcttaaacgtcaaggattggatgtcaagggcctc |
217 |
Q |
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| T |
53044182 |
aggtttcttcagcatcattttccctactgttatcttattctaatattgtgtcttgtttccagcacttcttaaacgtcaaggattggatgtcaagggcctc |
53044281 |
T |
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| Q |
218 |
gtgaaagctgatccagtaaaagaagaacctcaaccctacattgactgcacgggacatttacaagtactcgaatacattttatatcaaataactcatcaca |
317 |
Q |
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| T |
53044282 |
gtgaaagctgatccagtaaaagaagaacctcaaccctacattgactgcacgggacatttacaagtactcgaatacattttatatcaaataactcatcgca |
53044381 |
T |
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| Q |
318 |
actgatatctcatgatgcaatttttatcagtattatatttaatttttcagtggtcttatatcccctatgtatttttgatttctcttagtgggagaatctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53044382 |
actgatatctcatgatgcaatttttatcagtattatatttaatttttcagtggtcttatatcccctatgtattt--gatttctcttagtgggagaatctt |
53044479 |
T |
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| Q |
418 |
tagaattccaatcactatattctcaaaactctaccccattctaaagatgatcatcaaaatgagaaacttaaatgcacaagagctatattctatcatatgc |
517 |
Q |
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| T |
53044480 |
tagaattccaatcactatattctcaaaactctaccccattctaaagatgatcatcaaaatgagaaacttaaatgcacaagagctatattctatcatatgc |
53044579 |
T |
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| Q |
518 |
ttcaaatagccagcatcacacttcacagttcctacacaaaatggatgtagaaatatcaaacttgtggcccttgttttacctgatttatctgctaactatt |
617 |
Q |
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| T |
53044580 |
ttcaaatagccagcatcacacttcacagttcctacacaaaatggatgtagaaatatcaaacttggggcccttgttttacctgatttatctgctaactatc |
53044679 |
T |
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| Q |
618 |
aaccctgggataatttcttaccgcattgaatttttattaaaataagatcttggtgctgtagttttatccatttgtgtttggtccc |
702 |
Q |
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| T |
53044680 |
aaccctgggataatttcttaccgcactgaatttttattaaaataagatcttggtgctgtagttttatccatttgtgtttggtccc |
53044764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 15962953 - 15962845
Alignment:
| Q |
178 |
agcacttcttaaacgtcaaggattggatgtcaagggcctcgtgaaagctgatccagtaaaagaagaacctcaaccctacattgactgcacgggacattta |
277 |
Q |
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|||||| || |||||||||||| | |||||||||| || |||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||||||| |
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| T |
15962953 |
agcactcctgaaacgtcaaggagtaaatgtcaagggtctgttgaaagctgacgcagtaaaggaagaacctcaaccttacattgattgcactggacattta |
15962854 |
T |
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| Q |
278 |
caagtactc |
286 |
Q |
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| T |
15962853 |
caggtactc |
15962845 |
T |
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