View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_20 (Length: 289)
Name: NF18960_low_20
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 1694951 - 1694736
Alignment:
| Q |
10 |
agattatactgtattttctctaaacttgttacatatgaatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggct |
109 |
Q |
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| T |
1694951 |
agattatactgtattttctctaaacttgttacatatga--------tgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggct |
1694860 |
T |
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| Q |
110 |
ctctcttaccaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcct |
209 |
Q |
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| T |
1694859 |
ctctcttaccaacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggt---------aatttatattcct |
1694769 |
T |
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| Q |
210 |
atagtattgttgtgacttgtgagttaataattg |
242 |
Q |
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| T |
1694768 |
atagtattgttgtgatttgtgagttaataattg |
1694736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 1684511 - 1684276
Alignment:
| Q |
20 |
gtattttctctaaacttgttacatatgaatatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttacc |
119 |
Q |
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| T |
1684511 |
gtattttctctaaacttgttacatatga---tatgatcaacagaaaaaggttataacgactaagagtgtgaaatacatgccattctggctctctgtgttt |
1684415 |
T |
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| Q |
120 |
aacttcctcaatggactttgctggacaacatatgctctgctccacccctttgacatttatgttctggtaattcatttaatttatattcctatagtattgt |
219 |
Q |
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| T |
1684414 |
aacttcctcaatggactttgctggacaacatatgctctgctccatccctttgacctttatgttctggt---------aatttatattcctatagtattgt |
1684324 |
T |
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| Q |
220 |
tgtgacttgtgagttaataattggatgaatgatttatacttaacccat |
267 |
Q |
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| T |
1684323 |
tgtgacttgtgagttaataattggatgaatgatttatacttaacccat |
1684276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 1700012 - 1699864
Alignment:
| Q |
49 |
tatatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaac |
148 |
Q |
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| T |
1700012 |
tatataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatggtttgtgctggacaac |
1699913 |
T |
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| Q |
149 |
atatgctctgctccacccctttgacatttatgttctggtaattcattta |
197 |
Q |
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| T |
1699912 |
atatgctctcatccacccattggatatttatgtcttggtaattaattta |
1699864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 1674322 - 1674181
Alignment:
| Q |
50 |
atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatggactttgctggacaaca |
149 |
Q |
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| T |
1674322 |
atataatgaacaggaaaatgttataaaaacaaagagtgtgaaatacatgccattcttgccctctctggctatctttcttaatggattgtgttggacaaca |
1674223 |
T |
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| Q |
150 |
tatgctctgctccacccctttgacatttatgttctggtaatt |
191 |
Q |
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| T |
1674222 |
tatgctctcatcaaccccttcgacatttatctcctggtaatt |
1674181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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