View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_21 (Length: 271)
Name: NF18960_low_21
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 41371734 - 41371987
Alignment:
| Q |
7 |
gtgagaagaaataggcactaaggaaaaagagtcatataagaatatgttgtcttccctatctaatattgtaatt-cattacaattacataagatattagat |
105 |
Q |
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| T |
41371734 |
gtgagaagaaataggcacagaggaaaaagagtcatgtaagaatatgttgtcttctctatctaatattgtaatttcattacaattacataagatattagaa |
41371833 |
T |
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| Q |
106 |
ggaatcaacaaggttcgagttatggtggtcttatagtcaaaggatgagtttgaggcattggtatgtaaaggaaaattaacttggttgtaatggaaattaa |
205 |
Q |
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| T |
41371834 |
ggaatcaacaaggttcgagttatggtggtcttatagtcaaaggatgagtttgaggcattggtatgtaaaggaaaattaacttggttgtaatggaaattaa |
41371933 |
T |
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| Q |
206 |
tgtaaaagtag-----aaaaggatcattttttgacaccgtaaaaggatcatctt |
254 |
Q |
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| T |
41371934 |
tgtaaaagtagttattaaaaggatcatcttttgacaccgtaaaaggatcatctt |
41371987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 36904804 - 36904869
Alignment:
| Q |
149 |
atgagtttgaggcattggtatgtaaaggaaaattaacttggttgtaatggaaattaatgtaaaagt |
214 |
Q |
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| T |
36904804 |
atgagtttgaggcattgagatgcaaaggaaaattaacttggatgtaatggaaattaatgtaaaagt |
36904869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 37073041 - 37072906
Alignment:
| Q |
79 |
tcattacaattacataagatattagatggaatcaacaaggttcgagttatggtggtcttatagtcaaaggatgagtttgaggcattggtatgtaaaggaa |
178 |
Q |
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| T |
37073041 |
tcatcacaattacataagatgttacaaggaataaaaaagattcgattcatggtggtactacaagcagaaaatgagtttgaggcattgagatgcaagggaa |
37072942 |
T |
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| Q |
179 |
aattaacttggttgtaatggaaattaatgtaaaagt |
214 |
Q |
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| T |
37072941 |
aattaacttggatgtaatggaaattaatgtaaaagt |
37072906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 37076725 - 37076659
Alignment:
| Q |
150 |
tgagtttgaggcattggtatgtaaaggaaaattaacttggttgtaatggaaattaatgtaaaagtag |
216 |
Q |
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| T |
37076725 |
tgagtttgaggcattgagatgcaagggaaaactaacttgaatgtaatagaacttaatgtaaaagtag |
37076659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 37493824 - 37493889
Alignment:
| Q |
149 |
atgagtttgaggcattggtatgtaaaggaaaattaacttggttgtaatggaaattaatgtaaaagt |
214 |
Q |
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| T |
37493824 |
atgagattgatgcattgagatgcaagggaaagttaaattggatgtaatggaaattaatgtaaaagt |
37493889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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