View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_22 (Length: 258)
Name: NF18960_low_22
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 10346468 - 10346626
Alignment:
| Q |
14 |
caatatggaccacgtccaacatcttatggagtgcggcagccaccagataagaagttaacagtgtacacaccttcgatgaaaaagatgccggttgaaaaat |
113 |
Q |
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| T |
10346468 |
caatatggaccacgcccaacaccttatggagtgcggcagccaccagataagaagttaacagtgtacacaccttcgatcaaaaagatgccggttgaaaaat |
10346567 |
T |
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| Q |
114 |
catcggtgtacaaaccacaagttgagaagccctccgttttcaagccaccggtaaagaaa |
172 |
Q |
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| T |
10346568 |
catcagtgtacaaaccataagttgagaagccctccgttttcaagccaccggtaaagaaa |
10346626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 10316766 - 10316880
Alignment:
| Q |
14 |
caatatggaccacgtccaacatcttatggagtgcggcagccaccagataagaagttaacagtgtacacaccttcgatgaaaaagatgccggttgaaaaat |
113 |
Q |
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| T |
10316766 |
caatatggaccacgtccaacaccttatggagtgcggcagccaccagataagaagttaacagtgtacacaccttcgatgaaaaagacgccggttgaaaaac |
10316865 |
T |
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| Q |
114 |
catcggtgtacaaac |
128 |
Q |
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| T |
10316866 |
catcagtgtacaaac |
10316880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 245
Target Start/End: Original strand, 10317220 - 10317327
Alignment:
| Q |
123 |
acaaaccacaagttgagaagccctccgttttcaagccaccggtaaagaaaccacatgtccgcaaaccacgggttgagaagccttgatattaaaagctgcg |
222 |
Q |
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| T |
10317220 |
acaaaccataagttgagaagccctccgttttcaagccaccggtaaagaaac---------------cacgggttgagaagctttgatattaaaagctgcg |
10317304 |
T |
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| Q |
223 |
tcgccaccaaattaagtacccct |
245 |
Q |
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| T |
10317305 |
tcgccaccaaattaagtacccct |
10317327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 10333714 - 10333780
Alignment:
| Q |
158 |
ccaccggtaaagaaaccacatgtccgcaaaccacgggttgagaagccttgatattaaaagctgcgtc |
224 |
Q |
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| T |
10333714 |
ccaccggtaaagaaaccacatgtctgcaaaccacaggttgagaagccttgatattagaagccgcgtc |
10333780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 10346627 - 10346676
Alignment:
| Q |
196 |
tgagaagccttgatattaaaagctgcgtcgccaccaaattaagtacccct |
245 |
Q |
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| T |
10346627 |
tgagaagccttgatattagaagccgcgtcaccaccaaattaagtacccct |
10346676 |
T |
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