View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18960_low_3 (Length: 462)

Name: NF18960_low_3
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18960_low_3
NF18960_low_3
[»] chr1 (12 HSPs)
chr1 (17-230)||(1970232-1970450)
chr1 (17-245)||(2013390-2013620)
chr1 (145-246)||(23232746-23232846)
chr1 (142-245)||(44371528-44371631)
chr1 (148-245)||(43945374-43945471)
chr1 (145-238)||(48003201-48003294)
chr1 (409-455)||(1970188-1970234)
chr1 (148-249)||(12980417-12980518)
chr1 (145-256)||(46729475-46729584)
chr1 (149-245)||(34752722-34752818)
chr1 (194-245)||(15650050-15650101)
chr1 (44-127)||(33078090-33078173)
[»] chr2 (4 HSPs)
chr2 (148-243)||(35748161-35748256)
chr2 (128-245)||(11903566-11903683)
chr2 (128-245)||(30522637-30522754)
chr2 (185-263)||(17539541-17539619)
[»] chr3 (9 HSPs)
chr3 (128-243)||(33848598-33848713)
chr3 (145-248)||(41299948-41300050)
chr3 (145-247)||(26510521-26510623)
chr3 (145-245)||(41424529-41424629)
chr3 (147-233)||(36823225-36823311)
chr3 (165-254)||(21593530-21593619)
chr3 (156-243)||(31901679-31901766)
chr3 (156-261)||(31681271-31681376)
chr3 (156-261)||(31917318-31917423)
[»] chr8 (2 HSPs)
chr8 (127-245)||(13555628-13555746)
chr8 (127-245)||(13670819-13670937)
[»] chr7 (2 HSPs)
chr7 (128-245)||(22679353-22679470)
chr7 (147-249)||(33096982-33097084)
[»] chr4 (1 HSPs)
chr4 (145-245)||(28874530-28874630)
[»] chr6 (2 HSPs)
chr6 (126-245)||(2722546-2722665)
chr6 (145-245)||(34176166-34176265)
[»] chr5 (2 HSPs)
chr5 (148-263)||(41471653-41471768)
chr5 (17-95)||(26343572-26343650)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 1970450 - 1970232
Alignment:
Q  17 aaatgaaataaggcacaaaagagtgtaataattagtttattttcttctatcttaattttggatatatcatcatggcctcttgtatattttcttaacaacc 116  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  1970450 aaatgaaacaaggcaccaaatagtgtaataattagtttattttcttctatcttaattttggatatatcgtcatggcctcttgtatattttcttaccaacc 1970351  T
Q  117 at-----accacctattaggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcat 211  Q
    ||     |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1970350 ataccataccacctattaggggtgttcgctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcat 1970251  T
Q  212 ccaattgatttggttttaa 230  Q
    ||||||| |||||||||||    
T  1970250 ccaattggtttggttttaa 1970232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 2013620 - 2013390
Alignment:
Q  17 aaatgaaataaggcacaaaagagtgtaataattagtttattttcttctatcttaattttggatatatcatcatggcctcttgtatattt--tcttaacaa 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |  | ||  |||    
T  2013620 aaatgaaataaggcactaaagagtgtaataattagtttattttcttctatcttaatttgggatatatcgtcatggcttcttgtatatatattttttccaa 2013521  T
Q  115 ccataccacctattaggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatcca 214  Q
    |||||| | ||||||||||||||  |   || ||||||||||||||||| || ||||||||| ||||| ||||| |||| ||||||||||||||||||||    
T  2013520 ccatactatctattaggggtgttcgcgacattgattggttcggttttagaagaaaaaaccatctgatccaatctcttcaattttcttatttgttcatcca 2013421  T
Q  215 attgatttggttttaaaatcaaatccaatcc 245  Q
    |||||||||||||||||||||||||||||||    
T  2013420 attgatttggttttaaaatcaaatccaatcc 2013390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 23232846 - 23232746
Alignment:
Q  145 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 244  Q
    ||||||||||||||||| ||||||||||||||  |||| ||| ||| | ||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  23232846 tggattggttcggttttgggaggaaaaaccatccgatccaatattt-cggttttgttatttgttcgtccaattggtttggttttaaaatcaaatccaatc 23232748  T
Q  245 cg 246  Q
    ||    
T  23232747 cg 23232746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 44371631 - 44371528
Alignment:
Q  142 gaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatcca 241  Q
    |||||||||| |||| |||| | |||||||| ||| ||||| ||||||||| | ||| ||||||||||||||||||  ||||||||||||||||||||||    
T  44371631 gaatggattgtttcgattttggaaggaaaaatcatttgatccaatcttttcgggtttgttatttgttcatccaattagtttggttttaaaatcaaatcca 44371532  T
Q  242 atcc 245  Q
    ||||    
T  44371531 atcc 44371528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 43945374 - 43945471
Alignment:
Q  148 attggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatcc 245  Q
    ||||||| ||||||||||||||||| ||| ||||| ||||| ||  |||||||||||||||||||||||   ||||||||||||||||||||| ||||    
T  43945374 attggtttggttttaggaggaaaaatcatctgatccaatctatttggttttcttatttgttcatccaatcagtttggttttaaaatcaaatccgatcc 43945471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 48003294 - 48003201
Alignment:
Q  145 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaat 238  Q
    |||||||||||| ||||  |||||||||| || ||||| |||||||||  |||| |||||||||||| |||||| |||| ||||||||||||||    
T  48003294 tggattggttcgattttgagaggaaaaactatttgatccaatcttttctcttttgttatttgttcattcaattggtttgattttaaaatcaaat 48003201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 1970234 - 1970188
Alignment:
Q  409 taacacttatgattatacaatgcttcgtataaagttgttcctatgct 455  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  1970234 taacacttatgattatacaatgcttcgtataaagttgttcctgtgct 1970188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 12980417 - 12980518
Alignment:
Q  148 attggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccga 247  Q
    ||||||| |||||| ||||||||||||||  |||| ||||| |||  |||| ||||||||| ||||||||  |||| |||||||||||||| ||||| ||    
T  12980417 attggtttggttttgggaggaaaaaccatccgatccaatctcttcgattttattatttgtttatccaatttgtttgattttaaaatcaaattcaatctga 12980516  T
Q  248 tc 249  Q
    ||    
T  12980517 tc 12980518  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 46729584 - 46729475
Alignment:
Q  145 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 244  Q
    |||||||||||| |||||||||||||||||||  |||| ||||| ||| ||||| ||||||||||||  ||||  ||||   |||||||||||| |||||    
T  46729584 tggattggttcgattttaggaggaaaaaccattcgatccaatctcttcggttttgttatttgttcatttaattagtttg--attaaaatcaaattcaatc 46729487  T
Q  245 cgatctgatcca 256  Q
    | || |||||||    
T  46729486 caatatgatcca 46729475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 34752818 - 34752722
Alignment:
Q  149 ttggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatcc 245  Q
    |||||||||||||   |||||||| |||  |||| ||| | ||||||||| ||||||||||||| ||||| ||||  |||||||| |||| ||||||    
T  34752818 ttggttcggttttgaaaggaaaaatcatccgatcaaatttcttcagttttgttatttgttcatcaaattggtttgactttaaaattaaattcaatcc 34752722  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 15650050 - 15650101
Alignment:
Q  194 gttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatcc 245  Q
    ||||| |||||| |||||||||||| ||||||||||||||| |||| |||||    
T  15650050 gttttgttatttattcatccaattggtttggttttaaaatctaatctaatcc 15650101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 33078173 - 33078090
Alignment:
Q  44 ataattagtttattttcttctatcttaattttggatatatcatcatggcctcttgtatattttcttaacaaccataccacctat 127  Q
    |||||| | |||||||  ||||| |||||||| |||||| | ||||| ||||||||||| ||||||  ||||||||||| ||||    
T  33078173 ataatttgattattttactctatattaatttttgatataacgtcatgacctcttgtataatttctttccaaccataccatctat 33078090  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 35748256 - 35748161
Alignment:
Q  148 attggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaat 243  Q
    ||||||||||||||||||||||||||||| ||||| |||  |||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  35748256 attggttcggttttaggaggaaaaaccatttgatccaattatttcggttttgttatttgttcatccaattggtttggttttaaaatcaaatccaat 35748161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 11903566 - 11903683
Alignment:
Q  128 taggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttt 227  Q
    ||||||||||  | || ||||||||||||||||| | ||||||||||||  |||| ||| | ||| ||||| ||||||||||||||||||| ||||||||    
T  11903566 taggggtgttcgcggattggattggttcggttttggaaggaaaaaccatccgatccaatgtcttcggttttgttatttgttcatccaattggtttggttt 11903665  T
Q  228 taaaatcaaatccaatcc 245  Q
    ||||||||||||||||||    
T  11903666 taaaatcaaatccaatcc 11903683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 30522754 - 30522637
Alignment:
Q  128 taggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttt 227  Q
    ||||||||||  | || ||||||||||||||||| | ||||||||||||  |||| ||| | ||| ||||| ||||||||||||||||||| ||||||||    
T  30522754 taggggtgttcgcggattggattggttcggttttggaaggaaaaaccatccgatccaatgtcttcggttttgttatttgttcatccaattggtttggttt 30522655  T
Q  228 taaaatcaaatccaatcc 245  Q
    ||||||||||||||||||    
T  30522654 taaaatcaaatccaatcc 30522637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 17539541 - 17539619
Alignment:
Q  185 atcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccgatctgatccataaaaat 263  Q
    ||||||||  |||| ||||||||||||||||||| ||||||||||||||||||| |||| | |||| ||||| ||||||    
T  17539541 atcttttcgattttgttatttgttcatccaattggtttggttttaaaatcaaattcaattcaatctaatccaaaaaaat 17539619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 33848598 - 33848713
Alignment:
Q  128 taggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttt 227  Q
    ||||||||||  | || ||||||||||| |||||| ||||||||| |||  |||| ||||| ||||||||| ||||||||||||||||||| ||||||||    
T  33848598 taggggtgttcgcggattggattggttcagttttacgaggaaaaatcatccgatccaatctcttcagttttgttatttgttcatccaattggtttggttt 33848697  T
Q  228 taaaatcaaatccaat 243  Q
    ||||||||||||||||    
T  33848698 taaaatcaaatccaat 33848713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 41299948 - 41300050
Alignment:
Q  145 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 244  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||  || |||||||||| ||||||||||||||| |||| |||| |||||||||||||||    
T  41299948 tggattggttcggttttaggaggaaaaatcatctgatccaatcactttagttttctta-ttgttcatccaattggtttgattttgaaatcaaatccaatc 41300046  T
Q  245 cgat 248  Q
    ||||    
T  41300047 cgat 41300050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 26510521 - 26510623
Alignment:
Q  145 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 244  Q
    ||||||||||||||||| |||| ||||| ||| ||||| ||| ||||| ||| | || |||||||||||||||| |||||||||||||||||||||||||    
T  26510521 tggattggttcggttttgggagtaaaaatcatctgatccaattttttcggttctgttgtttgttcatccaattggtttggttttaaaatcaaatccaatc 26510620  T
Q  245 cga 247  Q
    |||    
T  26510621 cga 26510623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 41424629 - 41424529
Alignment:
Q  145 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 244  Q
    ||||||||||||||||| |||||||||||||   |||| |||   ||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||    
T  41424629 tggattggttcggttttgggaggaaaaaccaaccgatccaattacttcagttttgttatttgctcatccaatttgtttggttttaaaatcaaatccaatc 41424530  T
Q  245 c 245  Q
    |    
T  41424529 c 41424529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 36823225 - 36823311
Alignment:
Q  147 gattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaat 233  Q
    ||||||||||||||| |||||||||| ||| ||||| ||||| ||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  36823225 gattggttcggttttgggaggaaaaatcatttgatccaatctcttcggttttgttatttgttcatctaattgattttgttttaaaat 36823311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 21593530 - 21593619
Alignment:
Q  165 aggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccgatctgatc 254  Q
    |||||||| ||| ||||| ||||||||||||||| |||||| |||||| ||||  ||||||||||||||||||| |||||| ||||||||    
T  21593530 aggaaaaatcatctgatccaatcttttcagttttgttatttattcatctaattagtttggttttaaaatcaaattcaatccaatctgatc 21593619  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 31901766 - 31901679
Alignment:
Q  156 ggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaat 243  Q
    |||||| ||||||||||||||  |||| |||   ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  31901766 ggttttgggaggaaaaaccatccgatccaattacttcggttttgttatttgtttatccaattgatttggttttaaaatcaaatccaat 31901679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 31681271 - 31681376
Alignment:
Q  156 ggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccgatctgatcc 255  Q
    |||||| ||||||||||||||  |||| |||   ||  ||||| ||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||    
T  31681271 ggttttgggaggaaaaaccatccgatccaattacttgggttttgttatttgttcatccaattggtttggttttaaaatcaaatctaattcaatctgatcc 31681370  T
Q  256 ataaaa 261  Q
    | ||||    
T  31681371 acaaaa 31681376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 31917423 - 31917318
Alignment:
Q  156 ggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccgatctgatcc 255  Q
    |||||| |||| ||||||||| ||||| |||   ||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||| | ||| |||||    
T  31917423 ggttttgggagaaaaaaccatctgatccaattacttcggttttgttatttgttcatccaattggtttggttttaaaatcaaatctaattcaatccgatcc 31917324  T
Q  256 ataaaa 261  Q
    | ||||    
T  31917323 acaaaa 31917318  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 13555746 - 13555628
Alignment:
Q  127 ttaggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggtt 226  Q
    |||||||||||  | || ||||||||||||||||| | ||||||||| ||  |||| ||| | ||| ||||| |||||||||||||||||||||||||||    
T  13555746 ttaggggtgttcgcggattggattggttcggttttggaaggaaaaactatccgatccaatgtcttcggttttgttatttgttcatccaattgatttggtt 13555647  T
Q  227 ttaaaatcaaatccaatcc 245  Q
    |||||||||||||||||||    
T  13555646 ttaaaatcaaatccaatcc 13555628  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 13670819 - 13670937
Alignment:
Q  127 ttaggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggtt 226  Q
    |||||||||||  | || ||||||||||||||||| | ||||||||| ||  |||| ||| | ||| ||||| |||||||||||||||||||||||||||    
T  13670819 ttaggggtgttcgcggattggattggttcggttttggaaggaaaaactatccgatccaatgtcttcggttttgttatttgttcatccaattgatttggtt 13670918  T
Q  227 ttaaaatcaaatccaatcc 245  Q
    |||||||||||||||||||    
T  13670919 ttaaaatcaaatccaatcc 13670937  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 22679470 - 22679353
Alignment:
Q  128 taggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttt 227  Q
    ||||||||||  | || ||||||||||||||||| | |||||||||||| | ||| ||| | ||| ||||| ||||||||||||||||||| ||||||||    
T  22679470 taggggtgttcgcggattggattggttcggttttggaaggaaaaaccatctaatccaatgtcttcggttttgttatttgttcatccaattggtttggttt 22679371  T
Q  228 taaaatcaaatccaatcc 245  Q
    ||||||||||||||||||    
T  22679370 taaaatcaaatccaatcc 22679353  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 33096982 - 33097084
Alignment:
Q  147 gattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccg 246  Q
    ||||||||||||||| ||||||||||  || ||||| |||   ||  ||||| ||| ||||||||||||||| ||||||||||||||||||  |||||||    
T  33096982 gattggttcggttttgggaggaaaaataatctgatccaattactttggttttgttacttgttcatccaattggtttggttttaaaatcaaactcaatccg 33097081  T
Q  247 atc 249  Q
    |||    
T  33097082 atc 33097084  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 28874630 - 28874530
Alignment:
Q  145 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 244  Q
    ||||||||||| ||||||  |||||||| ||||||||| ||||| |||  |||| |||||||||||||||| || ||||||||||||||||||| |||||    
T  28874630 tggattggttcagttttaaaaggaaaaatcatatgatccaatctcttcgattttgttatttgttcatccaaatggtttggttttaaaatcaaattcaatc 28874531  T
Q  245 c 245  Q
    |    
T  28874530 c 28874530  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 2722665 - 2722546
Alignment:
Q  126 attaggggtgtttcctgaatggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggt 225  Q
    ||||||||||||| | || ||||||||||||||||| |||| ||||| ||| ||||| |||   ||  |||||  ||||| ||||| |||||| ||||||    
T  2722665 attaggggtgtttgcggattggattggttcggttttgggagaaaaaatcatctgatccaattgctttggttttgctatttattcattcaattggtttggt 2722566  T
Q  226 tttaaaatcaaatccaatcc 245  Q
    ||||||||||||||||||||    
T  2722565 tttaaaatcaaatccaatcc 2722546  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 34176265 - 34176166
Alignment:
Q  145 tggattggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatc 244  Q
    |||||||||||| |||| ||||||||||||||  |||| ||||||||| |||||  ||||| |||||||||||| |||  | ||| ||||||||||||||    
T  34176265 tggattggttcgatttttggaggaaaaaccatccgatc-aatcttttcggttttgctatttattcatccaattggtttaatcttagaatcaaatccaatc 34176167  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 41471768 - 41471653
Alignment:
Q  148 attggttcggttttaggaggaaaaaccatatgatctaatcttttcagttttcttatttgttcatccaattgatttggttttaaaatcaaatccaatccga 247  Q
    |||||||| ||| | |||||||||| ||| ||| ||||||| |||  |||| |||||||||||| |||||| |||||||||| ||| ||||  ||||| |    
T  41471768 attggttcagttatgggaggaaaaatcatttgagctaatctcttcgattttgttatttgttcattcaattggtttggttttagaataaaatttaatccaa 41471669  T
Q  248 tctgatccataaaaat 263  Q
    || ||| || ||||||    
T  41471668 tccgattcaaaaaaat 41471653  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 26343572 - 26343650
Alignment:
Q  17 aaatgaaataaggcacaaaagagtgtaataattagtttattttcttctatcttaattttggatatatcatcatggcctc 95  Q
    |||| ||||||| ||| ||||| | | |||||||| || || |||||| |||||| ||||||||||||| |||||||||    
T  26343572 aaataaaataagacactaaagaatattataattagattgttctcttctgtcttaaatttggatatatcaccatggcctc 26343650  T

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