View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18960_low_5 (Length: 454)

Name: NF18960_low_5
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18960_low_5
NF18960_low_5
[»] chr7 (12 HSPs)
chr7 (1-439)||(42848570-42849007)
chr7 (264-437)||(42855475-42855648)
chr7 (3-216)||(42853226-42853435)
chr7 (280-360)||(42857084-42857164)
chr7 (1-88)||(42855115-42855201)
chr7 (32-88)||(42855191-42855247)
chr7 (397-440)||(42857184-42857227)
chr7 (5-55)||(42856757-42856807)
chr7 (5-55)||(42860834-42860884)
chr7 (128-205)||(42856910-42856986)
chr7 (128-205)||(42860987-42861063)
chr7 (386-430)||(42861513-42861557)


Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 42848570 - 42849007
Alignment:
Q  1 gcttctctcactatggttttttcttgatctcattttcattttcttttcactattgggaggtattcaagtcttccttaattttaattttaattttaactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42848570 gcttctctcactatggttttttcttgatctcattttcattttcttttcactattgggaggtattcaagtcttccttaattttaattttaattttaactac 42848669  T
Q  101 tcaagatttatgatactagaagtaaatttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacac 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42848670 tcaagatttatgataatagaagtaaatttcaaagactattattctgtttgatgattttttcgactcatattttaggaggactacatgaatttggatacac 42848769  T
Q  201 cagagtcatttaactagtagctatgcttggccgttctgaagctcacaaagatgcaagcaccactgtaacgcatttactctattttctgtttctgcatatt 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42848770 cggagtcatttaactagtagctatgcttggccgttctgaagctcacaaagatgcaagcaccactgtaacacatttactctattttctgtttctgcatatt 42848869  T
Q  301 tttaactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataacttgattaggcttataattctttc 400  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42848870 tttgactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcattctctatggatataactt-attaggcttataattctttc 42848968  T
Q  401 ccttctttactaggaattgtcaattcattgcgtgtctct 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42848969 ccttctttactaggaattgtcaattcattgcgtgtctct 42849007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 264 - 437
Target Start/End: Original strand, 42855475 - 42855648
Alignment:
Q  264 tgtaacgcatttactct-attttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgcatt 362  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  42855475 tgtaacgcatt-actcttattttctgtttctgcatatttttcactctcccattaggtgaatttcaggccattgctgttgtgaaacctctattcttgcatt 42855573  T
Q  363 ctctatggatataacttgattaggcttataattctttcccttctttactaggaattgtcaattcattgcgtgtct 437  Q
    | | |  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42855574 ccccaaagatataacttgattaggcttataactctttcccttctttactaggaattgtcaattcattgcgtgtct 42855648  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 42853226 - 42853435
Alignment:
Q  3 ttctctcactatggttttttcttgatctcattttcattttcttttcactattgggaggtattcaagtcttccttaattttaattttaattttaactactc 102  Q
    ||||||| ||| |||||||||| |||| ||| || ||||||||||||||||||||||| ||| || |||||||||||           |||||| |||||    
T  42853226 ttctctctctaaggttttttctggatcccatgttaattttcttttcactattgggagggatttaaatcttccttaat-----------ttttaaatactc 42853314  T
Q  103 aagatttatgatactagaagtaaatttcaaagactattattctgt------ttgacgattttttcgactcatattttaggaggactacatgaatttggat 196  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||      ||||| || |||| ||||| | |||||||||||||||||||| ||||||    
T  42853315 aagatgtatgattctagaagtaaatttcaaagacta-tattctgttgagtgttgacaatgttttggactcgtcttttaggaggactacatgaacttggat 42853413  T
Q  197 acac--cagagtcatttaacta 216  Q
    ||||  ||||||| ||||||||    
T  42853414 acactacagagtcgtttaacta 42853435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 42857084 - 42857164
Alignment:
Q  280 tattttctgtttctgcatatttttaactttcctatttggtgagtttcaggccattgctgttgtgaaacctctattcttgca 360  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42857084 tattttctgtttctgcatatttttcactctcccatttggtgaatttcaggccattgctgttgtgaaacctctattcttgca 42857164  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42855115 - 42855201
Alignment:
Q  1 gcttctctcactatggttttttcttgatctcattttcattttcttttcactattgggaggtattcaagtcttccttaattttaatttt 88  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||    
T  42855115 gcttctctcactatggttttttctggatctcattttcatttt-ttttcactattgggagggatttaagtcttctttaattttaatttt 42855201  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 42855191 - 42855247
Alignment:
Q  32 attttcattttcttttcactattgggaggtattcaagtcttccttaattttaatttt 88  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||    
T  42855191 attttaattttcttttcactattgggagggatttaagtcttccttaatttaaatttt 42855247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 42857184 - 42857227
Alignment:
Q  397 tttcccttctttactaggaattgtcaattcattgcgtgtctctg 440  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  42857184 tttcccttctttactaggaattgtcaattcattgcgagtctctg 42857227  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 42856757 - 42856807
Alignment:
Q  5 ctctcactatggttttttcttgatctcattttcattttcttttcactattg 55  Q
    ||||||| | |||||||||| ||||||||||  ||||||||||||||||||    
T  42856757 ctctcacgaaggttttttctggatctcatttcaattttcttttcactattg 42856807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 42860834 - 42860884
Alignment:
Q  5 ctctcactatggttttttcttgatctcattttcattttcttttcactattg 55  Q
    ||||||| | |||||||||| ||||||||||  ||||||||||||||||||    
T  42860834 ctctcacgaaggttttttctggatctcatttcaattttcttttcactattg 42860884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 42856910 - 42856986
Alignment:
Q  128 ttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagag 205  Q
    |||||||||| ||||| |||| ||| || |||||||||  | |||||||| ||||||||||| |||||||||| ||||    
T  42856910 ttcaaagactgttattgtgtt-gacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagag 42856986  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 42860987 - 42861063
Alignment:
Q  128 ttcaaagactattattctgtttgacgattttttcgactcatattttaggaggactacatgaatttggatacaccagag 205  Q
    |||||||||| ||||| |||| ||| || |||||||||  | |||||||| ||||||||||| |||||||||| ||||    
T  42860987 ttcaaagactgttattgtgtt-gacaatgttttcgacttgtcttttaggatgactacatgaacttggatacactagag 42861063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 42861513 - 42861557
Alignment:
Q  386 gcttataattctttcccttctttactaggaattgtcaattcattg 430  Q
    |||||||| | |||||||||||||||||||| || ||||||||||    
T  42861513 gcttataactatttcccttctttactaggaactgacaattcattg 42861557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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