View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_6 (Length: 447)
Name: NF18960_low_6
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 432
Target Start/End: Complemental strand, 43060413 - 43059985
Alignment:
| Q |
7 |
ctatttacacacttgaatggaactaaaagcaacataatggataacttgaaaggcacaatctgttctttgtaactgaatgagtagaaaattgataaatgct |
106 |
Q |
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| T |
43060413 |
ctatttacacacttgaatggaactaaaagcaacataatggataacttgaaaggcacaatctgttctttgtaactgaatgagtagaagattgataaatgct |
43060314 |
T |
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| Q |
107 |
agaagggtcgaaagatagaacaataaacaattagatagatacatcacacatgaatttgagcttgccaaacgccaataaattaatcacattgtcagcagaa |
206 |
Q |
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| T |
43060313 |
agaagggtcgaaagatagaacaataaacaattagatagatacatcacaaattaatttgagcttgccaaacgccaataaattaatcacattgtcagcagaa |
43060214 |
T |
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| Q |
207 |
gaaatatc----ataaacaaaaagagcacacttcacaataaggatgcatttgcaacaaattaaacaaaaatcctaaaacttgtaaaagatgcaaaaataa |
302 |
Q |
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| T |
43060213 |
gaaatatcttatataaacaaaaagagcacactgcacaataaggatgcatttgcaacaaattaaacaaaaatcctaaaacttgtaaaagatgcaaaaataa |
43060114 |
T |
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| Q |
303 |
tgccacattacttccagcctgctcaacaaaaacacctctgcaataaaatnnnnnnntctaaagaacatctcaatattttcaggaaacaaaaatccatatt |
402 |
Q |
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| T |
43060113 |
tgccacattacttccagcctgctcaacaaaaacacctctgcaataaaa-aaaaaaatctaaagaacatctcaatattgtcaggaaacaaaaatccatatt |
43060015 |
T |
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| Q |
403 |
gatacaaaacagaggaaaacagctgcaccg |
432 |
Q |
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| T |
43060014 |
gatacaaaacagaggaaaacagctgcaccg |
43059985 |
T |
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