View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_7 (Length: 440)
Name: NF18960_low_7
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 5677352 - 5676941
Alignment:
| Q |
18 |
ttactaaattggagttggcttggaatgtgggtttcgtaagcttcttatgaagtgtgacccgaaggttgttacaaagatgattacaatcagatttatagta |
117 |
Q |
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| T |
5677352 |
ttactaaattggagttggcttggaatgtgggtttcgtaagattcttatgaagtgtgacccgaaggttgttacaaagatgattacaatcagatttatagta |
5677253 |
T |
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| Q |
118 |
ataatctttattggtggatggaaaattaccaaaaagcataacctggataaaggaaatacatgtactataaaaggacaatggaatgttatttcaaaggtct |
217 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5677252 |
ataatccttattggtggatgggaaattaccaaaaagcataacctggataaaggaaatacatgtactataaaaggacaatgcaatgttatttcaaaggtcc |
5677153 |
T |
|
| Q |
218 |
gaagtttgtcatccaaattgatcggtcgttttcagttagggttaacatccactagccatctcacaatctctcatctgtttatgagcatgagagccatttc |
317 |
Q |
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||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
5677152 |
gaagtttgtcatccaaattgatcagtcgtttccagctagggttaacatccactagacatctcacaatctcccatctgttgatgagcatgagagccatttc |
5677053 |
T |
|
| Q |
318 |
ttttagttttaggaatattttgagcatctcactcttttccttcatggatcgtaatcttcctttgcaaactcaaaattcttctattgattattgcaactat |
417 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5677052 |
ttatagttttaggaatattttgagcatctcactcttttccttcatggatcgtaatcttcctttgcaaactcaaaattcttctattgattattgcaactat |
5676953 |
T |
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| Q |
418 |
gcattcattcat |
429 |
Q |
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| T |
5676952 |
gctttcattcat |
5676941 |
T |
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