View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_8 (Length: 435)
Name: NF18960_low_8
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 31619233 - 31618862
Alignment:
| Q |
1 |
ggagggggaactggtccgaaaacagaggacggagtattggagcctgatccaaaaacagagagcggattcttggggcctgatccgcaaacggagaatcctc |
100 |
Q |
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| T |
31619233 |
ggagggggaactggtccgaaaacagaggacggagtattggagcctgatccaaaaacagagagtggattcttggggcctgatccgcaaacggagaatcctc |
31619134 |
T |
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| Q |
101 |
aaacaccaacaaattctgatgaccatgaagatcaacttgataacaattttgcattcaatcttactggcaaggagtgggtggtgannnnnnnnnnnnngat |
200 |
Q |
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| T |
31619133 |
agacaccaataaattctgatgacgatgaagatcaacttgataacacttttgcattcaatcttactggcaaggagtgggtggtgatttttctttttttgat |
31619034 |
T |
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| Q |
201 |
cctctttgtaggttcaacattgtttaaagcacattaattaggacttgttttaattaattttctcatgaaattaatggacgttgttttggcatattctaat |
300 |
Q |
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| T |
31619033 |
cctctttgtaggttcaacattgtttaaagcacattaactaggact--tatgagttaggagt-tcttttaatgaatggacattgttttagc--attctaat |
31618939 |
T |
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| Q |
301 |
tgtggggaatttcgagtcaagatcctctttattttgtaccctcaccatttctttcattttgaaagatatagattcaa |
377 |
Q |
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| T |
31618938 |
tgtggggaatttcgagtcaagatcctctccattttatatcctcatcatttctttcatttggagagatgtagattcaa |
31618862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 72 - 310
Target Start/End: Complemental strand, 31605245 - 31605010
Alignment:
| Q |
72 |
ggggcctgatccgcaaacggagaatcctcaaacaccaacaaattctgatgaccatgaagatcaacttgataacaattttgcattcaatcttactggcaag |
171 |
Q |
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| T |
31605245 |
ggggactgatgcgcaaacggagaatacacagataccaacaaactctgatgacgatgaagatcaacttgacaacacttttgcattcaatcttaccagcaat |
31605146 |
T |
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| Q |
172 |
gagtgggtggtgannnnnnnnnnnnngatcctctttgtaggttcaacattgtttaaagcacattaattaggacttgttttaattaattttctcatgaaat |
271 |
Q |
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| T |
31605145 |
gagtgggtggtggtttttcttcttttgatcctctttgtaggttcaacattgtttaaagcacattaattag-agttgttttaattaattttctcatgaaat |
31605047 |
T |
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| Q |
272 |
taatggacgttgttttggcatattctaattgtggggaat |
310 |
Q |
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| T |
31605046 |
taatggacgttgttttgg--gattcttattgtggggaat |
31605010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 104 - 287
Target Start/End: Complemental strand, 31623807 - 31623624
Alignment:
| Q |
104 |
caccaacaaattctgatgaccatgaagatcaacttgataacaattttgcattcaatcttactggcaaggagtgggtggtgannnnnnnnnnnnngatcct |
203 |
Q |
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| T |
31623807 |
caccaaaagattctgatgatgatgaagatcaacttgacaacacttttgcattcaatcttactggcaatgagtgggtggtgatttatcttttttcgatcct |
31623708 |
T |
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| Q |
204 |
ctttgtaggttcaacattgtttaaagcacattaattaggacttgttttaattaattttctcatgaaattaatggacgttgtttt |
287 |
Q |
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| T |
31623707 |
ctttgtaggttcaacattgtttaatgcacattaattaggagttgttttaattaattttttcatgtaattaatggatattgtttt |
31623624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 31612828 - 31612763
Alignment:
| Q |
227 |
aagcacattaattaggacttgttttaattaattttctcatgaaattaatggacgttgttttggcat |
292 |
Q |
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| T |
31612828 |
aagcacattaattaggatttgttttaattaattttctcatgaaattaatggatattgttttggcat |
31612763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 31608398 - 31608318
Alignment:
| Q |
104 |
caccaacaaattctgatgaccatgaagatcaacttgataacaattttgcattcaatcttactggcaaggagtgggtggtga |
184 |
Q |
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| T |
31608398 |
caccaaaaaattctgatgatgatgaagatcaacttgacaacacttctgcattcaatcttactggcaatgagtgagtggtga |
31608318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 31607398 - 31607340
Alignment:
| Q |
199 |
atcctctttgtaggttcaacattgtttaaagcacattaattaggacttgttttaattaa |
257 |
Q |
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| T |
31607398 |
atcctctttgtaggtttgacattgtttaaagcacattaattagaagttgatttaattaa |
31607340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 32887938 - 32887875
Alignment:
| Q |
314 |
gagtcaagatcctctttattttgtaccctcaccatttctttcattttgaaagatatagattcaa |
377 |
Q |
| |
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|||| ||||||||||| |||||||| |||| ||||||||||||||| || ||||||||| |||| |
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| T |
32887938 |
gagttaagatcctcttcattttgtatcctctccatttctttcatttggagagatatagactcaa |
32887875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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