View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18960_low_9 (Length: 404)
Name: NF18960_low_9
Description: NF18960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18960_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 396
Target Start/End: Complemental strand, 33496241 - 33495851
Alignment:
| Q |
5 |
gccggctcatcattaatatcttacagtgaattccttattgaatctgtaattcctcacttggaaccaacatatagtttcatccattttcaatccccaagac |
104 |
Q |
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|||| ||| |||| || ||||||||||||||| ||| |||||| | || |||| ||||||||||| | |||||| ||||||||||||||||||||||| |
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| T |
33496241 |
gccgtctcttcatgaagatcttacagtgaattacttgctgaatcgg-aaggcctctcttggaaccaatagatagttacatccattttcaatccccaagac |
33496143 |
T |
|
| Q |
105 |
gatgctgctatactctccatccctctccataaccgtctgttgtttgacaccagaatatggaaataacaacacccttatttgtattgatctactccaccct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33496142 |
gatgctgctatactctccatccctctccataaccgtctgttgtttgacaccagaatatggaaataacaacacccttatttgtattgatctactccaccct |
33496043 |
T |
|
| Q |
205 |
catgattctgcccacgataattctctttggatgaatatctagaatcttgatattcctcaccgtgttcgagcctttatatggcatttagctcatcattgct |
304 |
Q |
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||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
33496042 |
catgattctgcccacaataattctctttggatgaatatctggactctcgatattcctcaccgtgttcgagcctttatgtggcatttagctcatcatttct |
33495943 |
T |
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| Q |
305 |
tgcccgcccatgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattcatctc |
396 |
Q |
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| T |
33495942 |
tgcccacccgtgtcaatcttaatgtaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcggaatcccacattaatctc |
33495851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 181 - 396
Target Start/End: Original strand, 4243510 - 4243725
Alignment:
| Q |
181 |
atttgtattgatctactccaccctcatgattctgcccacgataattctctttggatgaatatctagaatcttgatattcctcaccgtgttcgagccttta |
280 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
4243510 |
atttgtagtgatctactccaccctcatgattctgcccacaataattcttcatggatgaatatctggaatctcaatattcctcaccgtgtccgagcctttc |
4243609 |
T |
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| Q |
281 |
tatggcatttagctcatcattgcttgcccgcccatgtcaatcttaatgcaagaggaattcagtgcgaggaatcatgcgttatgtgtgaaacttttgcgga |
380 |
Q |
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|||||| |||||||||| ||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
4243610 |
tatggcgtttagctcataattgcttgcccactcgtgtcaatcttaatgcaagaggaatccagtgcgaggaatcatgtgttatgtttgaaaattttgcgga |
4243709 |
T |
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| Q |
381 |
atcccacattcatctc |
396 |
Q |
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|| ||||| ||||||| |
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| T |
4243710 |
atgccacactcatctc |
4243725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 4243305 - 4243467
Alignment:
| Q |
5 |
gccggctcatcattaatatcttacagtgaattccttattgaatctgtaattcctcacttggaaccaacatatagtttcatccattttcaatccccaagac |
104 |
Q |
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||||||||||||| || | ||||||||||||| ||| ||||||||| || |||| ||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
4243305 |
gccggctcatcatgaagaccttacagtgaattacttgttgaatctggaaggcctctcttggaaccaacaaatagttacatccattttcaatccccaagac |
4243404 |
T |
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| Q |
105 |
gatgctgctatactctccatccctctccataaccgtctgttgtttgacaccagaatatggaaa |
167 |
Q |
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| T |
4243405 |
gctgctgctatactctccatccctctacataaccgtctgttgtctgacaccagaatatggaaa |
4243467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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