View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18961_high_2 (Length: 423)
Name: NF18961_high_2
Description: NF18961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18961_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 2 - 410
Target Start/End: Complemental strand, 44089836 - 44089430
Alignment:
| Q |
2 |
aaggtatgcttaatgcttccttgactcgtctcagtataattagaggatatagttttctaactaactaccaatacttagctgatgcactcaaataaacaaa |
101 |
Q |
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| T |
44089836 |
aaggtatgcttaatgcttccttgactcgtctcagtataattagaggatatagttttctaactaactaccaatacttcgctgatgcactcaaataaaca-- |
44089739 |
T |
|
| Q |
102 |
gataattttaattatcaaatatgtaaaatgaatgtccctactataatcaaaacccaagaattcaagaataactcaagtgtcctttgcaattcttcacgcc |
201 |
Q |
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| T |
44089738 |
gataattttaattatcaaatatgtaaaatgaatgtcactactataatcaaaacccaagaattcaagaataactcaagtgtcctttgcaattcttcacgcc |
44089639 |
T |
|
| Q |
202 |
ttgaatcctctattttacatattctgaatttccatcaggcaaaagaacaagagtattcataatttaagcaatccatcctcctcctagtttctttactttg |
301 |
Q |
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| T |
44089638 |
ttgaatcctctattttacatattctgaatttccatcaggcaaaagaacaagagtattcataatttaagcaatccatcctcctcctagtttctttactttg |
44089539 |
T |
|
| Q |
302 |
ctttttatatcatataagaatgggaagcaaccttctgaaagtgagaagctgcgatcaacatacctactaaaaacaagaataaaataaaaaatcattagtg |
401 |
Q |
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| T |
44089538 |
ctttttatatcatataagaatgggaagcaaccttctgaaagtgagaagctgcgatcaacatacctactaaaaacaagaataaaatacaaaatcattagtg |
44089439 |
T |
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| Q |
402 |
tatattttg |
410 |
Q |
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| T |
44089438 |
tatattttg |
44089430 |
T |
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