View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18961_high_4 (Length: 336)
Name: NF18961_high_4
Description: NF18961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18961_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 24859947 - 24859633
Alignment:
| Q |
14 |
aatgtttcatacagtcttgtatattttttgcagcatgtgccaacatattcaattgcagaagaaatgacaggatttggagcatcaatattagagggtatac |
113 |
Q |
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| T |
24859947 |
aatgtttcatacagtcttgtatattttttgcagcatgtgccaacatattcaattgcagaagaaatgacaggatttggagcatcaatattagagggtatac |
24859848 |
T |
|
| Q |
114 |
taacatttgtgttagtgtgcacaatttacgctgcaagggacgctaggcgtggtcaagtaagttcaaccgaaacacttgtaattggtttaatagcaggaac |
213 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | |
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| T |
24859847 |
taacatttgtgttagtgtacacaatttacgctgcaagggacactaggcgtggtcaagtaagttcaaccggaacacttgtaattggtttaattgcaggagc |
24859748 |
T |
|
| Q |
214 |
aagtgtgttagcagcaggtccattctctggcgggtcaatcaaccctgcatgtgcttttggatctgcttccattgccggaacattcagaaatcaagctgtc |
313 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24859747 |
aagtgttttagcagcaggtccattctctggcgggtcaatcaaccctgcatgtgcttttggatctgcttccattgccggaacattcagaaatcaagctgtc |
24859648 |
T |
|
| Q |
314 |
tattgggttggtcct |
328 |
Q |
| |
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||||||||||||||| |
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| T |
24859647 |
tattgggttggtcct |
24859633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 15340796 - 15341103
Alignment:
| Q |
21 |
catacagtcttgtatattttttgcagcatgtgccaacatattcaattgcagaagaaatgacaggatttggagcatcaatattagagggtatactaacatt |
120 |
Q |
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| T |
15340796 |
catacactcttgtatattttttgcagcatgtgccaacatattcaattgcagaagagatggcaggatttggagcatcaatattagagggtatactaacatt |
15340895 |
T |
|
| Q |
121 |
tgtgttagtgtgcacaatttacgctgcaagggacgctaggcgtggtcaagtaagttcaaccgaaacacttgtaattggtttaatagcaggaacaagtgtg |
220 |
Q |
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|||||| |||| ||||||||| | ||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
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| T |
15340896 |
tgtgttggtgtacacaatttatgatgcaatggacactaggcgtggtcaagtaagttcaacaggaacacttgtaattggtttaatagcaggagcaagtgtg |
15340995 |
T |
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| Q |
221 |
ttagcagcaggtccattctctggcgggtcaatcaaccctgcatgtgcttttggatctgcttccattgccggaacattcagaaatcaagctgtctattggg |
320 |
Q |
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||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
15340996 |
ttagcagcaggtccattctctggtgggtgaatcaaccatgcatgtgcttttggttctgcttcaattgatagaacattcaggaatcaagctgtctattggg |
15341095 |
T |
|
| Q |
321 |
ttggtcct |
328 |
Q |
| |
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|||||||| |
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| T |
15341096 |
ttggtcct |
15341103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 24918809 - 24919114
Alignment:
| Q |
21 |
catacagtcttgtatattttttgcagcatgtgccaacatattcaattgcagaagaaatgacaggatttggagcatcaatattagagggtatactaacatt |
120 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
24918809 |
catacactcttgtatattttttgcagcatgtgccaacatattcaattgcagaagagatgtcaggatttggagcatcaatattagagggtatattaacatt |
24918908 |
T |
|
| Q |
121 |
tgtgttagtgtgcacaatttacgctgcaagggacgctaggcgtggtcaagtaagttcaaccgaaacacttgtaattggtttaatagcaggaacaagtgtg |
220 |
Q |
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|||||| |||| ||||||||| | ||||| |||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| || ||||| |
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| T |
24918909 |
tgtgtttgtgtacacaatttatgatgcaatggacactaggcgtggtcaagtaagttcaacaggaacacttgttattggtttaatagcaggagcatgtgtg |
24919008 |
T |
|
| Q |
221 |
ttagcagcaggtccattctctggcgggtcaatcaaccctgcatgtgcttttggatctgcttccattgccggaacattcagaaatcaagctgtctattggg |
320 |
Q |
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||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||||| |
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| T |
24919009 |
ttagcagcaggtccattctctggtgggtgaatcaaccatgcatgtgcttttggttctgcttcttttgttagaacattcaggaatcaagctgtctattggg |
24919108 |
T |
|
| Q |
321 |
ttggtc |
326 |
Q |
| |
|
|||||| |
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| T |
24919109 |
ttggtc |
24919114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 166 - 326
Target Start/End: Original strand, 1081811 - 1081971
Alignment:
| Q |
166 |
tcaagtaagttcaaccgaaacacttgtaattggtttaatagcaggaacaagtgtgttagcagcaggtccattctctggcgggtcaatcaaccctgcatgt |
265 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| ||||||| |
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| T |
1081811 |
tcaagtaagttcaacaggaacacttgtaattggtttaatagcaggagcaagtgtgttagcagcaggtccattctctggtgggtgaatcaaccatgcatgt |
1081910 |
T |
|
| Q |
266 |
gcttttggatctgcttccattgccggaacattcagaaatcaagctgtctattgggttggtc |
326 |
Q |
| |
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|||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
1081911 |
gcttttggttctgcttccattgctagaacattcaggaatcaagctgtctattgggttggtc |
1081971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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