View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18961_low_10 (Length: 283)
Name: NF18961_low_10
Description: NF18961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18961_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 46217671 - 46217572
Alignment:
| Q |
166 |
agtggcatcttcagttaacttgcaagctcaaacaacagcaaattacaattctagcttaacagaatcgatttttcttattaatctaaccgttacgtgattc |
265 |
Q |
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| T |
46217671 |
agtggcatcttcagttaacttgcaagctcaaacaacaacaaattacaattctagcttaacagaatcgatttttcttgttaatctaaccgttacgtgattc |
46217572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46217822 - 46217761
Alignment:
| Q |
1 |
tctccgagtaattaattacactaattaatcgtaccctcttttatttacatttaccgcgctat |
62 |
Q |
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| T |
46217822 |
tctccgagtaattaattacactaattaatcgtaccctcttttatttacatttaccgcgctat |
46217761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 46217740 - 46217698
Alignment:
| Q |
91 |
aacacagaatctaaccacaacgagaatcgcgttctgcataatc |
133 |
Q |
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| T |
46217740 |
aacacagaatctaaccacaacgagaatcgcgttctgcataatc |
46217698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 2526426 - 2526388
Alignment:
| Q |
95 |
cagaatctaaccacaacgagaatcgcgttctgcataatc |
133 |
Q |
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| T |
2526426 |
cagaatctaaccacaacgagaatcaggttctgcataatc |
2526388 |
T |
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