View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18961_low_11 (Length: 272)
Name: NF18961_low_11
Description: NF18961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18961_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 44089853 - 44090123
Alignment:
| Q |
11 |
gaacgacattaagcatacctatgaaaacattttacccggtcatgatttaaatgaaatatttctttaaataataaaccagcaacttttgggacaattacta |
110 |
Q |
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| T |
44089853 |
gaacgacattaagcatacctatgaaaacattttacccggtcatgatttaaatgaaatatttctttaaataataaaccagcaacttttgggacaattacta |
44089952 |
T |
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| Q |
111 |
ttttcatttgtagaagaaatagtcaaacagcgaagaagagat----------------aatatgataaatattttaccaagctatccctgctagattttt |
194 |
Q |
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| T |
44089953 |
ttttcatttgtagaagaaatagtcaaacagcgaagaagagataatatgacaaattttaaatatgataaatattttaccaagctatccctgctagattttt |
44090052 |
T |
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| Q |
195 |
tattgttgttattaacccct-tatattgcaacgtccttaataattgagctatgcgtttttcagagaataat |
264 |
Q |
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| T |
44090053 |
tgttgttgttattaacccctgtatattgcaatgtccttaataattaagctatacgtttttcaaagaataat |
44090123 |
T |
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