View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18961_low_15 (Length: 227)
Name: NF18961_low_15
Description: NF18961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18961_low_15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 267052 - 267278
Alignment:
| Q |
1 |
gggatcaaacctgatgttattacctacagagttctaatcgatgggagattaaaagttgataacttccacgatgcaatcagactcttcaacgaaattattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
267052 |
gggatcaaacctgatgttattacctacagagttctaatcgatgggagattaaaagttgataacttccacgatgcaatcagactcttcaatgaaattattg |
267151 |
T |
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| Q |
101 |
acggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatatttgtacaatgaaa |
200 |
Q |
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| T |
267152 |
acggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatatttgtacaatgaaa |
267251 |
T |
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| Q |
201 |
tgtcttccaagggaatgaaaccatcaa |
227 |
Q |
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| T |
267252 |
tgtcttccaagggaatgaaaccatcaa |
267278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 13587227 - 13587361
Alignment:
| Q |
88 |
aacgaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatat |
187 |
Q |
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||||||||||||||| |||||||| |||| | |||||| |||||||||||||||||| ||||| |||||||| | ||||||| | ||||| | | ||| |
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| T |
13587227 |
aacgaaattattgaccgaggactagaaccaggtaatgtaacatacactgctctagttcctggcttgttaaacagtgggcacacggagaaatcaataata- |
13587325 |
T |
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| Q |
188 |
ttgtacaatgaaatgtcttccaagggaatgaaacca |
223 |
Q |
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| T |
13587326 |
ttgtataatgaaatatcttccaatgaaatgatacca |
13587361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 6783362 - 6783236
Alignment:
| Q |
91 |
gaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatgaagaaagcggttatatttg |
190 |
Q |
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| T |
6783362 |
gaaattattgaccaaggactaaaaccagatagagtaacatacactgctctaatttggggcttgttaaacggaaggcaaaaggagatagcaattata-tac |
6783264 |
T |
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| Q |
191 |
tacaatgaaatgtcttccaagggaatga |
218 |
Q |
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| T |
6783263 |
tatgatgaaatgtcttccaagggaatga |
6783236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 41627960 - 41628112
Alignment:
| Q |
70 |
gatgcaatcagactcttcaacgaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcaca |
169 |
Q |
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| T |
41627960 |
gatgcaattagactcttcaatgaagttatgaaaagaggactagaaccagataatgtaacatacactgctttattttcgggcttgttaaacagtgggaact |
41628059 |
T |
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| Q |
170 |
tgaagaaagcggttatatttgtacaatgaaatgtcttccaagggaatgaaacca |
223 |
Q |
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| T |
41628060 |
cagagatagcagttaca-ttgtataatgaaatgtcttccaagggaatgacacca |
41628112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 51283720 - 51283868
Alignment:
| Q |
73 |
gcaatcagactcttcaacgaaattattgacggaggactacaaccggataatgtcacatacactgctctagtttctggcctgttaaacggagggcacatga |
172 |
Q |
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| T |
51283720 |
gcaattagactcttcaat-aagttattaacagaggactagaaccagataatgtaacatacactgctttattttcgggcttgttaaacagtgggcacccag |
51283818 |
T |
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| Q |
173 |
agaaagcggttatatttgtacaatgaaatgtcttccaagggaatgaaacca |
223 |
Q |
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| T |
51283819 |
agatagaagttaca-ttgtataatgaaatgtcttccaagggaatgacacca |
51283868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51282078 - 51282131
Alignment:
| Q |
1 |
gggatcaaacctgatgttattacctacagagttctaatcgatgggagattaaaa |
54 |
Q |
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| T |
51282078 |
gggatcaaacctgatgaaattacctacacagttctacttgatgggaaattaaaa |
51282131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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