View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18961_low_17 (Length: 205)
Name: NF18961_low_17
Description: NF18961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18961_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 46217671 - 46217572
Alignment:
| Q |
88 |
agtggcatcttcagttaacttgcaagctcaaacaacagcaaattacaattctagcttaacagaatcgatttttcttattaatctaaccgttacgtgattc |
187 |
Q |
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| T |
46217671 |
agtggcatcttcagttaacttgcaagctcaaacaacaacaaattacaattctagcttaacagaatcgatttttcttgttaatctaaccgttacgtgattc |
46217572 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 46217738 - 46217698
Alignment:
| Q |
15 |
cacagaatctaaccacaacgagaatcgcgttctgcataatc |
55 |
Q |
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| T |
46217738 |
cacagaatctaaccacaacgagaatcgcgttctgcataatc |
46217698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 2526426 - 2526388
Alignment:
| Q |
17 |
cagaatctaaccacaacgagaatcgcgttctgcataatc |
55 |
Q |
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| T |
2526426 |
cagaatctaaccacaacgagaatcaggttctgcataatc |
2526388 |
T |
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