View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18961_low_2 (Length: 562)
Name: NF18961_low_2
Description: NF18961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18961_low_2 |
 | |
|
| [»] scaffold0334 (1 HSPs) |
| | |
|
| [»] scaffold1661 (1 HSPs) |
| | |
|
| [»] scaffold0029 (2 HSPs) |
| | |
|
| [»] scaffold1407 (1 HSPs) |
| | |
|
| [»] scaffold0453 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0226 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Complemental strand, 11177799 - 11177266
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
11177799 |
acttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaagacaccaagctttatgcaaagaaatttag |
11177700 |
T |
|
| Q |
117 |
tgatttagaaactgattannnnnnnnncacgttattgtaatcaaggttttcagtttcctttttcattcaaagcttgtgattatcgcataacattaacttt |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177699 |
tgatttagaaactgattatttttttt-cacgttattgtaatcaaggttttcagtttcctttttcattcaaagcttgtgattatcgcataacattaacttt |
11177601 |
T |
|
| Q |
217 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttattatattatatcgctgcacatta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177600 |
cagaacctgtgttctattttcgttcagcaatccaatttcttattactttcttactcaattccaattgttattacttattatattatatcgctgcacatta |
11177501 |
T |
|
| Q |
317 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177500 |
ttactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaat |
11177401 |
T |
|
| Q |
417 |
tgaattgttgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcgttgtttgcgctactgtttgg--- |
513 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11177400 |
tgaattgttgttgctgggctgagtatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctactgtttggtgt |
11177301 |
T |
|
| Q |
514 |
----tgttcgatttcaattgcagttatgtttcttg |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11177300 |
ttggtgttcgatttcaattgcagttatgtttcttg |
11177266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 23046613 - 23046683
Alignment:
| Q |
24 |
acatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacacca |
94 |
Q |
| |
|
|||||||||| | ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23046613 |
acatgatcaggaacacttgagagcagatttttccctataaataaacctgaagaactcagttgaagacacca |
23046683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 24 - 553
Target Start/End: Original strand, 16175 - 16727
Alignment:
| Q |
24 |
acatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttagtgattta |
123 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16175 |
acatgatcagaagcacttcaaagcagatttttctctataaatagacctgaagaactcagttgatgacaccaagctttatacaaagaaatttagtgattta |
16274 |
T |
|
| Q |
124 |
gaaactgattannnnnnnnncacgttattgtaatcaaggttttcagtttcctttttcattcaaagcttgtgattatcgcataacattaactttcagaacc |
223 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16275 |
gaaactgattattttttt--cacgttattgtaatcaaggttttcagtttccttttttattcaaagcttgtgattatcgcataacattaactttcagaacc |
16372 |
T |
|
| Q |
224 |
tgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttattatattatatcgctgcacattattactca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16373 |
tgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttattatattatatcgctgcacattattactca |
16472 |
T |
|
| Q |
324 |
acccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaattgaattg |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16473 |
acccgattttattttgcagcacttaccaatccaaattccctttattttcaaagttgctgctacgtcccttttctttcttttatttaattaaattgaattg |
16572 |
T |
|
| Q |
424 |
------------------ttgttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcgttgtttgcgcta |
505 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16573 |
ttgttgttggctgttccattgttgcgggactgagcatataacaattgttattgttgagtacgtgtgccatataatccatatattttcattgtttgcgcta |
16672 |
T |
|
| Q |
506 |
c-------tgtttggtgttcgatttcaattgcagttatgtttcttggagtattat |
553 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16673 |
ctgtttggtgtttggtgttcgattccaattgcagttatgtttcttggagtattat |
16727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 11164151 - 11164261
Alignment:
| Q |
24 |
acatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttagtgattta |
123 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||| || ||||| |
|
|
| T |
11164151 |
acatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaagacaccaagctttttagagagaaattgtgttattta |
11164250 |
T |
|
| Q |
124 |
gaaactgatta |
134 |
Q |
| |
|
||||||||||| |
|
|
| T |
11164251 |
gaaactgatta |
11164261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 16635681 - 16635756
Alignment:
| Q |
24 |
acatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgcttt |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
16635681 |
acatgatcagaagcatttcagagccgatttttcc-tataaatagacctaaagaattcagttgaagacaccaagcttt |
16635756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 50881759 - 50881680
Alignment:
| Q |
16 |
cacttgagacatgatcagaagcacttcagaggaga-tttttccctataaatagacctgaagaactcagttgaagacacca |
94 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||| ||||| ||||||||||||||| || |||||||||||| ||||| |
|
|
| T |
50881759 |
cacttgagacatgatcagaggcacttcaaagcagattttttgcctataaatagaccttaaagactcagttgaaggcacca |
50881680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 15932713 - 15932826
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||| | | |
|
|
| T |
15932713 |
acttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaagacaccaagctttttagagagaaactgtg |
15932812 |
T |
|
| Q |
117 |
tgatttagaaactg |
130 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
15932813 |
ttatttagaaactg |
15932826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 15941055 - 15941168
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||| | | |
|
|
| T |
15941055 |
acttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaagacaccaagctttttagagagaaactgtg |
15941154 |
T |
|
| Q |
117 |
tgatttagaaactg |
130 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
15941155 |
ttatttagaaactg |
15941168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 47921947 - 47921834
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||| |||||||||| ||||| | |||||| ||| ||||||| |||||||| | | ||||| || |
|
|
| T |
47921947 |
acttaagacatgatcagaagcacttcagggcagatttcagcctataaataaacctggaaaactcacttgtggacaccaagctttatagagataaattcag |
47921848 |
T |
|
| Q |
117 |
tgatttagaaactg |
130 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47921847 |
caatttagaaactg |
47921834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 7157712 - 7157820
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||| |||||||||| ||||| | |||||||||| ||||||| ||||| | | |||||||| | |
|
|
| T |
7157712 |
acttgagacatgatcagacgcacttcag-gcagatttcaacctataaataaacctggaaaactcagttgtggacaccaagcttttcagagagaaattttg |
7157810 |
T |
|
| Q |
117 |
tgatttagaa |
126 |
Q |
| |
|
| |||||||| |
|
|
| T |
7157811 |
ttatttagaa |
7157820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1661 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold1661
Description:
Target: scaffold1661; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 225 - 153
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaaga |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225 |
acttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaaga |
153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 88715 - 88643
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaaga |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88715 |
acttgagacatgatcagaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaaga |
88643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 77131 - 77091
Alignment:
| Q |
50 |
atttttccctataaatagacctgaagaactcagttgaagac |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77131 |
atttttccctataaatagacctgaagaactcagttgaagac |
77091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 23689315 - 23689430
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || | ||||||| | |
|
|
| T |
23689315 |
acttgggacatgatatgaagcacctcaaaggagatttttgcctataaatagacctgaagaactcagttgaagacaccaagctttttagagagaaattcat |
23689414 |
T |
|
| Q |
117 |
tgatttagaaactgat |
132 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
23689415 |
tgatttagaaactgat |
23689430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 19901892 - 19901815
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacacca |
94 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19901892 |
acttgagacatgatcggaagcacttcagagcagatttttccctataaatagacctgaagaactcagttgaatacacca |
19901815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 20934363 - 20934253
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| || || || | ||||||| || |
|
|
| T |
20934363 |
acttgagatatgatcagaagcacttcagagcagatttttctctataaatagacctgaagaactcagttgaatacaccaagcattttagagagaaattcag |
20934264 |
T |
|
| Q |
117 |
tgatttagaaa |
127 |
Q |
| |
|
||||||||| |
|
|
| T |
20934263 |
caatttagaaa |
20934253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 19183853 - 19183932
Alignment:
| Q |
26 |
atgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttataca |
105 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
19183853 |
atgaccagaagcacttcagagcagatttttccccataaataaacctgaagaactcagttgaagacaccaagctttttaca |
19183932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 34657133 - 34657245
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |||||||||| ||||| | |||||||||| ||||||| ||||| || | ||||||| | |
|
|
| T |
34657133 |
acttgagacatgatcagaagcacttcag-gcagatttcagcctataaataaacctggaaaactcagttgtggacaccaagctttttagagagaaattgtg |
34657231 |
T |
|
| Q |
117 |
tgatttagaaactg |
130 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
34657232 |
ttatttagaaactg |
34657245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 31232289 - 31232395
Alignment:
| Q |
27 |
tgatcagaagcacttcagaggagatttttc-cctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttagtgatttaga |
125 |
Q |
| |
|
|||||||||||||| ||||| | |||||| |||||||||| || | || ||||||||||||| ||||| ||||| || | ||| ||||||||| ||||| |
|
|
| T |
31232289 |
tgatcagaagcact-cagagcatattttttgcctataaataaacttaaa-aactcagttgaaggcaccaagctttttaaagagatatttagtgacttaga |
31232386 |
T |
|
| Q |
126 |
aactgatta |
134 |
Q |
| |
|
| ||||||| |
|
|
| T |
31232387 |
atctgatta |
31232395 |
T |
|
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Target: scaffold1407 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 1415 - 1356
Alignment:
| Q |
28 |
gatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaa |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1415 |
gatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaa |
1356 |
T |
|
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Target: scaffold0453 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 9650 - 9752
Alignment:
| Q |
24 |
acatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttagtgattta |
123 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| ||||||| ||||| | | |||||||| || ||||| |
|
|
| T |
9650 |
acatgatcagaagcacttcaaagcagatttttccctataaatagacttgaagaactcagttgatgacaccaagcttttcagagagaaattttgttattta |
9749 |
T |
|
| Q |
124 |
gaa |
126 |
Q |
| |
|
||| |
|
|
| T |
9750 |
gaa |
9752 |
T |
|
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Target: scaffold0177 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 32430 - 32484
Alignment:
| Q |
28 |
gatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcag |
82 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32430 |
gatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcag |
32484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 3574 - 3642
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttg |
85 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |||||||||| ||||| | |||||||||| |
|
|
| T |
3574 |
acttgagacatgatcagaagcacttcagggcagatttcagcctataaataaacctggaaaactcagttg |
3642 |
T |
|
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Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 39229 - 39116
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |||||||||| || || | |||||||||| | |||| |||||||| | | ||||| || |
|
|
| T |
39229 |
acttgagacatgatcagaagcacttcagggcagatttcagcctataaataaacttggaaaactcagttgtgaataccaagctttatagagataaattcag |
39130 |
T |
|
| Q |
117 |
tgatttagaaactg |
130 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39129 |
caatttagaaactg |
39116 |
T |
|
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 17951144 - 17951072
Alignment:
| Q |
17 |
acttgagacatgatcagaagcacttcagaggagatttttccctataaatagacctgaagaactcagttgaaga |
89 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
17951144 |
acttgggacatgatcagaagcacttcagagccaattttatcctataaataaaccttgaaaactcagttgaaga |
17951072 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 7589131 - 7589063
Alignment:
| Q |
60 |
ataaatagacctgaagaactcagttgaagacaccatgctttatacaaagaaatttagtgatttagaaac |
128 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||| ||||| || | ||||| |||| |||||||||| |
|
|
| T |
7589131 |
ataaatagacatgaagaactcatttgaaggcaccaagctttctagagagaaacttagcaatttagaaac |
7589063 |
T |
|
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