View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18961_low_4 (Length: 418)

Name: NF18961_low_4
Description: NF18961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18961_low_4
NF18961_low_4
[»] chr3 (32 HSPs)
chr3 (15-400)||(22457986-22458372)
chr3 (15-400)||(22480967-22481353)
chr3 (15-262)||(22436128-22436375)
chr3 (15-401)||(22635003-22635390)
chr3 (15-262)||(22467448-22467695)
chr3 (15-401)||(22357499-22357886)
chr3 (15-262)||(22629940-22630185)
chr3 (15-262)||(22430667-22430914)
chr3 (15-271)||(22442239-22442495)
chr3 (15-400)||(22367421-22367810)
chr3 (15-233)||(22620381-22620599)
chr3 (15-262)||(30988790-30989037)
chr3 (19-262)||(22353313-22353557)
chr3 (15-241)||(22656551-22656777)
chr3 (15-125)||(37930357-37930467)
chr3 (15-256)||(21946364-21946605)
chr3 (205-256)||(22180157-22180208)
chr3 (15-122)||(22647669-22647776)
chr3 (15-256)||(22115825-22116066)
chr3 (309-401)||(22436425-22436518)
chr3 (200-256)||(21937893-21937949)
chr3 (317-400)||(22430972-22431056)
chr3 (309-400)||(22442536-22442628)
chr3 (15-256)||(22053446-22053687)
chr3 (200-256)||(22028740-22028796)
chr3 (200-256)||(22035257-22035313)
chr3 (200-256)||(22105448-22105504)
chr3 (200-256)||(22187728-22187784)
chr3 (91-177)||(22628096-22628182)
chr3 (300-401)||(22630223-22630325)
chr3 (200-256)||(21931161-21931217)
chr3 (208-256)||(22614949-22614997)
[»] chr1 (4 HSPs)
chr1 (15-175)||(2304971-2305131)
chr1 (15-167)||(34990046-34990198)
chr1 (15-122)||(34976245-34976352)
chr1 (15-122)||(34983356-34983463)
[»] chr5 (1 HSPs)
chr5 (19-164)||(40580766-40580911)


Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 22457986 - 22458372
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22457986 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 22458085  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22458086 tcttccaatgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatc 22458185  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttttaactctatatttag 314  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  22458186 caaaatacaacaaacatgacttgagattgtaagacagatcatggtaaccgagacctacaattttttttatcttcaaatcttcttttaactctatatttag 22458285  T
Q  315 aatttcactaaacttataccattctgatgtatttctatctttgcaagat-aaataccaccaatgagtacaattgctagtggcaatcc 400  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22458286 attttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaatcc 22458372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 22480967 - 22481353
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480967 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 22481066  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22481067 tcttccaatgtttttaccatatcatctttcacaaatccttcagccatccattgccgaatcagtatatttgtaggaactatacaaccttcaggatataatc 22481166  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttttaactctatatttag 314  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  22481167 caaaatacaacaaacatgacttgagattgtaagacagatcatggtaaccgagacctacaattttttttatcttcaaatcttcttttaactctatatttag 22481266  T
Q  315 aatttcactaaacttataccattctgatgtatttctatctttgcaagat-aaataccaccaatgagtacaattgctagtggcaatcc 400  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22481267 attttcactaaacttataccattctgatgtatttctatctttgcaagataaaataccaccaatgagtacaattgctagtggcaatcc 22481353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 22436128 - 22436375
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||| |||| ||| ||| ||| |||||||||| | ||||| |    
T  22436128 atcatgaacacgacaactttttactcttccatcaatacttattgaaactacatgcaccaaacttctattgaccaactctattaaatatccttttgcaata 22436227  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||  || | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| | |||||||| |  |||||||||||||||    
T  22436228 tcttccaatgtccttcccctctcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatc 22436327  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 262  Q
    |||||||||| ||||| |||||||| | ||||| ||||||||||||||    
T  22436328 caaaatacaagaaacacgacttgaggtagtaaggcaaatcatggtaac 22436375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 401
Target Start/End: Original strand, 22635003 - 22635390
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||| |  ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||  |||||| |||  ||||||||| ||||||||     
T  22635003 atcatgaacgcggcaactttttactcttccatcaatactagttgaaactacttgcaccaaacttctatggatcaactctactaaatatccttctgcaacc 22635102  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    ||||| |||||  || | || || ||||||||||| |||||||| |||||||| ||| ||||| | |||| | |||||||| |  |||||||||||||||    
T  22635103 tcttcaaatgtccttcccctgtcttctttcacgaacccttcagcaatccattggcgagtcaatgtttttgaacgaactatatagtcttcaggatataatc 22635202  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttttaactctatatttag 314  Q
    |||||||||| |||||||||||||| | | | | ||||||||||||||  || |||| ||        ||| |  ||| ||| | |||||||  |||||     
T  22635203 caaaatacaagaaacatgacttgaggtagcatggcaaatcatggtaactaagtcctaaaatttttcttatcatggaatattcctctaactctgcatttat 22635302  T
Q  315 aatttcactaaacttataccattctgatgtatttctatctttgcaagata-aataccaccaatgagtacaattgctagtggcaatcct 401  Q
    | |||||||||||||  ||||||||  || |||||||||  ||| ||||| |||| ||||||||| |||||||||||| || ||||||    
T  22635303 attttcactaaacttcgaccattctattgaatttctatccgtgcgagatagaatatcaccaatgactacaattgctagaggtaatcct 22635390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 22467448 - 22467695
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||  |||||| ||| |||||||||| || |||||     
T  22467448 atcatgaacacgacaactttttactcttccatcaatacttattgaaactacttgcaccaaacttctatggatcaactctattaaatatccttcagcaacc 22467547  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||  |  | || || || ||||| || |||||||| |||||||| ||| ||||  | |||| | |||||||| |  |||||||||||||||    
T  22467548 tcttccaatgtcctccccctgtcttccttcacaaacccttcagcaatccattggcgagtcaacgtctttgaatgaactatatagtcttcaggatataatc 22467647  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 262  Q
    |||||||||| |||||||||||||| |||||||  |||| ||||||||    
T  22467648 caaaatacaagaaacatgacttgaggttgtaaggtaaattatggtaac 22467695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 401
Target Start/End: Original strand, 22357499 - 22357886
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||   || || ||| |||||||||| ||||||||     
T  22357499 atcatgaacacgacaacgttttactcttccatcaatactgattgaatctacttgcaccaaacttctatgtattaactcttttaaatatccttctgcaacc 22357598  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||  ||| || | | ||  | |||||| || |||||||| |||||||| ||| ||||| | |||| | ||||| || |  |||||||||||||||    
T  22357599 tcttccatcgttctttccccatattgtttcacaaacccttcagcaatccattgtcgagtcaatgtctttgaatgaactttatagtcttcaggatataatc 22357698  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttttaactctatatttag 314  Q
    |||||||||| |||||||||||||| | ||||| ||||||||||||||  |  |||| ||        ||  |  ||| ||| | |||||||  |||||     
T  22357699 caaaatacaagaaacatgacttgaggtagtaaggcaaatcatggtaactaaatcctaaaatttttcttattatggaatattcctctaactctgcatttat 22357798  T
Q  315 aatttcactaaacttataccattctgatgtatttctatctttgcaagat-aaataccaccaatgagtacaattgctagtggcaatcct 401  Q
    | ||||||||||||||||||||||   || | || ||||||||  || | ||||||||||||||| ||||||||||||||| ||||||    
T  22357799 attttcactaaacttataccattccattggaattttatctttgggagctaaaataccaccaatgactacaattgctagtggtaatcct 22357886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 22629940 - 22630185
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||| |||| |||||||||| |||||||||  |||||  ||||||||||||||||||||| ||||| || ||| ||| |||||||||| ||| ||||     
T  22629940 atcatgtacacgacaactttttactcttccat--atacttgttgaaactacttgcaccaaacttctacggaccaactctattaaatatccttctccaacc 22630037  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||| || |  |  | |||||||| || |||||||| |||||||| ||| |||| |  |||| | |||||||| |  |||||||||| ||||    
T  22630038 tcttccaatgttcttcccttgacttctttcacaaacccttcagcgatccattggcgagtcaacacctttgaacgaactatatagtcttcaggatagaatc 22630137  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 262  Q
    |||||||||| |||||||||||||| |||||||  |||||||||||||    
T  22630138 caaaatacaagaaacatgacttgaggttgtaaggtaaatcatggtaac 22630185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 22430667 - 22430914
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||||| || |||||||||||||||| |||||| ||||||||||||||| ||||  |||||| ||| |||||||||| ||||||||     
T  22430667 atcatgaacacgacaacttcttactcttccatcaatacttattgaatctacttgcaccaaacttctatggatcaactctattaaatatccttctgcaacc 22430766  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||| ||||||  || |  | |  |||||||| || |||||||| |||||||| | | | ||| | |||| |  ||||||| |  ||| |||||||||||    
T  22430767 tctttcaatgtccttcccgttttttctttcacaaacccttcagcaatccattgacaagttaatgtctttgaataaactatatagtctttaggatataatc 22430866  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 262  Q
    |||||||||| |||||||||||||| ||| ||| ||||||||||||||    
T  22430867 caaaatacaagaaacatgacttgaggttgcaaggcaaatcatggtaac 22430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 271
Target Start/End: Original strand, 22442239 - 22442495
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||||||||  ||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||| ||| ||  || |||||||||| ||||||||     
T  22442239 atcatgaacacggcaactttttactcttccatcaatactggttgaaactacttgcaccaaacttctacagattaacacttttaaatatccttctgcaacc 22442338  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    | |||||||||  || | | ||  |||||||| || |||||||| |||||||| ||| ||||| | |||| |  | ||  | |  |||| ||||||||||    
T  22442339 ttttccaatgtcctttccccatattctttcacaaacccttcagctatccattgacgagtcaatgtctttgaacaagcttcatagtcttcgggatataatc 22442438  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagaccta 271  Q
    |||||||||| |||||||||||||| ||| ||| |||||||||||||| ||| ||||    
T  22442439 caaaatacaagaaacatgacttgaggttgcaaggcaaatcatggtaactgagtccta 22442495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 22367421 - 22367810
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||||||||  ||||| | | |||||||||||||| | ||   | ||||| ||||||||| ||||| |||||| ||| |||||| ||| ||||||||     
T  22367421 atcatgaacacggcaactgtctactcttccatcaatagtgatcccatctactcgcaccaaacttctacggatcaactctattaaatgtccttctgcaacc 22367520  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||||||  || | || || |||||||| || |||||||| |||||||| ||| |||||||||||| | ||||  |  |  |||||||||||||||    
T  22367521 tcttccaatgtcattcccctttcttctttcacaaacccttcagcaatccattgacgagtcaatatatttgaacgaacatttgagtcttcaggatataatc 22367620  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaaccgagacctacaannnnnnnnatcttcaaatcttcttttaact---ctatatt 311  Q
    |||| ||||| |||||||||||||| ||| ||| ||||||||||||||  || |||| ||        ||| |  ||| ||| ||| |||   ||  |||    
T  22367621 caaagtacaagaaacatgacttgaggttgcaaggcaaatcatggtaactaagtcctagaattttttttatcatggaatattcctttgactgatctgcatt 22367720  T
Q  312 tagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaa-taccaccaatgagtacaattgctagtggcaatcc 400  Q
    || | |||||||||||||| |||||||   || ||| ||||||||||||| |||| |||||||||||| ||||||||| ||||| |||||    
T  22367721 tatattttcactaaacttagaccattcaattggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatcc 22367810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 22620381 - 22620599
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||| ||||||||||||| | ||||||| || || | ||||  |||||||||||||| ||||  |||||| |||||||| ||||| ||||||||     
T  22620381 atcatgaacgcaacaactttttgtttttccatcgattcttagtgaagatacttgcaccaaacttctatggatcaactctgttaagtatccttctgcaact 22620480  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||| || ||  | || || ||||| || || |||||||| |||||||||||||||||| | |||| |  |||| || || |||| ||||||||||    
T  22620481 tcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgccgaatcaatctctttgaatcaactttataatcttctggatataatc 22620580  T
Q  215 caaaatacaacaaacatga 233  Q
    |||||||||| ||||||||    
T  22620581 caaaatacaataaacatga 22620599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 30988790 - 30989037
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||| ||| ||| | |||||||  ||||  |||  |||||||||||| | ||||  |||||| |||||||||||||| ||||||||     
T  30988790 atcatgaacacgacaacctttagctttaccatcaactctaaccgaagatacttgcaccaagcttctatggatcaactctgttaaatatccttctgcaacg 30988889  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||| || ||  | || || || |||||||| |||||||| | |||||| ||||||||| | ||||    ||||  | || |||| ||||||| ||    
T  30988890 tcttccaaagtcttccctctttcctccttcacgaacccttcagctacccattgtcgaatcaatctctttgatttaacttcataatcttctggatatattc 30988989  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcatggtaac 262  Q
    ||||||||||||| ||||||||||||  ||||| |||||||| |||||    
T  30988990 caaaatacaacaagcatgacttgagagagtaaggcaaatcatcgtaac 30989037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 22353313 - 22353557
Alignment:
Q  19 tgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatctt 118  Q
    ||||||| |||||||||| |||||||||||||||| | |||| ||||||||||||||| ||||  ||| || ||| |||||||||| |||||||| ||||    
T  22353313 tgaacacgacaactttttactcttccatcaatactgactgaatctacttgcaccaaacttctatggattaactcttttaaatatccttctgcaacctctt 22353412  T
Q  119 ccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatccaaa 218  Q
    ||| |||  || | |  |  |||||||| || || ||||| |||||||| ||| ||||| ||| || |  ||||    |  ||||  |||||||||||||    
T  22353413 ccattgtccttcccccgtattctttcacaaacccctcagcaatccattgacgagtcaatgtatctgaataaacttcgtagtcttcgagatataatccaaa 22353512  T
Q  219 atacaacaaacatgacttgagattgt-aagacaaatcatggtaac 262  Q
    |||||| |||||||||||||| | || ||| ||||||||||||||    
T  22353513 atacaagaaacatgacttgaggtagtaaaggcaaatcatggtaac 22353557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 22656551 - 22656777
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||| |||||||||||||| | | |||| ||||| |||| |||   |||||| ||||||| ||  |  ||||| |||||||||||||| ||||||||     
T  22656551 atcatggacacaacaacttttagtttttccgtcaattctaactgaggatacttgtaccaaacatcggcgaatcaactctgttaaatatccttctgcaact 22656650  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||| |||||  | || || |||||||| || |||||||| ||||||||||| |||| | | ||||    ||||  | || |||| ||||||| ||    
T  22656651 tcttccaaagttttccccctttcttctttcacaaaaccttcagctatccattgccgtatcactctctttgattcaacttcataatcttctggatatattc 22656750  T
Q  215 caaaatacaacaaacatgacttgagat 241  Q
    |||||||||||||||||||||| ||||    
T  22656751 caaaatacaacaaacatgacttaagat 22656777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 37930357 - 37930467
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| |||||||||| |||||||||||||||   ||||||||||||||||||||| ||||| ||| || ||| |||||||||| || |||||     
T  37930357 atcatgaacacgacaactttttactcttccatcaataccggttgaaactacttgcaccaaacttctacagattaactcttttaaatatccttccgcaacc 37930456  T
Q  115 tcttccaatgt 125  Q
    | |||||||||    
T  37930457 ttttccaatgt 37930467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 21946605 - 21946364
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||| ||| ||| | |||||||| |||| ||||  |||||| ||||  | ||||  |||||| |||||||||||||| ||||| ||     
T  21946605 atcatgaacacgacaacctttagctttaccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgttaaatatccttctgccact 21946506  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||| || ||  | || || || ||||| || |||||||| |||||||| ||||||| | | || |    ||||  | || |||| ||||||| ||    
T  21946505 tcttccaaagtcttccctctttcctccttcacaaacccttcagctatccattgtcgaatcactctcttcgatttaacttcataatcttctggatatactc 21946406  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    ||||||| ||||| ||||||||||||| | ||| ||||||||    
T  21946405 caaaataaaacaagcatgacttgagatagcaaggcaaatcat 21946364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 22180208 - 22180157
Alignment:
Q  205 ggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  22180208 ggatatactccaaaatacaacaaacatgacttgagatagtaaggcaaatcat 22180157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 22647669 - 22647776
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    |||||||||||| |||||||| | | |||||||||| |||| ||||  |||||| ||||||| ||||  |||||| || ||||||||||  ||||||||     
T  22647669 atcatgaacacagcaacttttagtttttccatcaattctaactgaagatacttgaaccaaacttctatggatcaactcagttaaatatcgttctgcaact 22647768  T
Q  115 tcttccaa 122  Q
    ||||||||    
T  22647769 tcttccaa 22647776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 22116066 - 22115825
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||||| ||| ||| | |||||||| ||||  |||  |||||| |||| || ||||  |||||| ||||||| |||||| ||||| ||     
T  22116066 atcatgaacacgacaacctttagctttgccatcaattctaagcgaagatacttgaaccatacttctatggatcaactctgttatatatccctctgccact 22115967  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    || ||||  || ||| | || || || ||||| || |||||||| |||||||| ||| | | | | ||||    ||||  | || |||| || |||| ||    
T  22115966 tcatccatagtctttcccctttcctccttcacaaacccttcagctatccattgtcgagtgattctctttgatttaacttcaaaatcttctgggtatactc 22115867  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  22115866 caaaatacaacaaacatgacttgagatagtaaggcaaatcat 22115825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 401
Target Start/End: Original strand, 22436425 - 22436518
Alignment:
Q  309 atttagaatttcactaaacttataccattctgatgtatttctatctttgcaagat-aaataccaccaatgagtacaattgctagtggcaatcct 401  Q
    ||||| | ||||||||||||| |||||||| |  | ||||||||||||||||||| ||| ||||||| ||| |||||||||||| || ||||||    
T  22436425 atttatattttcactaaacttgtaccattcagtaggatttctatctttgcaagataaaagaccaccagtgactacaattgctagaggtaatcct 22436518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 21937949 - 21937893
Alignment:
Q  200 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    |||| ||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||    
T  21937949 cttctggatatactccaaaatacaacaagcatgacttgagatagtaaggcaaatcat 21937893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 400
Target Start/End: Original strand, 22430972 - 22431056
Alignment:
Q  317 tttcactaaacttataccattctgatgtatttctatctttgcaagataaa-taccaccaatgagtacaattgctagtggcaatcc 400  Q
    |||||||||||||| |||||||   || ||| ||||||||||||| |||| |||||||||||| ||||||||| ||||| |||||    
T  22430972 tttcactaaacttagaccattcaattggattcctatctttgcaagctaaaataccaccaatgactacaattgcgagtggtaatcc 22431056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 22442536 - 22442628
Alignment:
Q  309 atttagaatttcactaaacttataccattctgatgtatttctatctttgcaagataaa-taccaccaatgagtacaattgctagtggcaatcc 400  Q
    ||||| | ||||| |||||| |||||||||   ||||||||||||||||  || |||| |||||||||||| ||||||||||||||| |||||    
T  22442536 atttatattttcattaaactcataccattcaattgtatttctatctttgggagctaaaataccaccaatgactacaattgctagtggtaatcc 22442628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 22053687 - 22053446
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||| ||| | ||| ||| | |||||||| |||| ||||  |||||| ||||  | ||||  |||||| |||| ||||||||| ||||| ||     
T  22053687 atcatgaacacgacatcctttagctttgccatcaattctaagtgaagatacttgaaccaggcttctatggatcaactctgataaatatccttctgccact 22053588  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaatatatttgtaggaactatacaaccttcaggatataatc 214  Q
    |||||||| || ||  |  | || || ||||| || ||||| || |||||||| ||||||| |   |||| |  ||||  | || |||| ||||||| ||    
T  22053587 tcttccaaagtcttccccttttcctccttcacaaacccttctgctatccattgtcgaatcactcgctttgaattaacttcataatcttctggatatactc 22053488  T
Q  215 caaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    ||||||||||||| ||||||| ||||| ||||| ||||||||    
T  22053487 caaaatacaacaagcatgactcgagatagtaaggcaaatcat 22053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 22028796 - 22028740
Alignment:
Q  200 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22028796 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 22035313 - 22035257
Alignment:
Q  200 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22035313 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22035257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 22105504 - 22105448
Alignment:
Q  200 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    |||| ||||||| |||||| |||||||| ||||||||||||| ||||| ||||||||    
T  22105504 cttctggatatactccaaagtacaacaagcatgacttgagatagtaaggcaaatcat 22105448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 22187784 - 22187728
Alignment:
Q  200 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    |||| ||||||| ||||||||||||||| |||| |||||||| ||||| ||||||||    
T  22187784 cttctggatatactccaaaatacaacaagcatggcttgagatagtaaggcaaatcat 22187728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 22628096 - 22628182
Alignment:
Q  91 tctgttaaatatccatctgcaacatcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatcaat 177  Q
    |||||||||||||| ||||  || ||||| || |||||| | || || |||||||| ||||||||||| ||| |||| |||||||||    
T  22628096 tctgttaaatatccttctgtgacttcttcgaaagtttttcccctttcttctttcacaaatccttcagctatcaattgtcgaatcaat 22628182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 22630223 - 22630325
Alignment:
Q  300 taactctatatttagaatttcactaaacttataccattctgatgtatttctatctttgcaagat-aaataccaccaatgagtacaattgctagtggcaat 398  Q
    |||||||| ||||| | |||||||||||||| |||||||   || ||||||| |||||| |||| ||||| ||||  ||| |||||||||||| || |||    
T  22630223 taactctacatttatattttcactaaacttagaccattcaattggatttctaactttgcgagataaaatatcaccggtgactacaattgctagaggtaat 22630322  T
Q  399 cct 401  Q
    |||    
T  22630323 cct 22630325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 21931217 - 21931161
Alignment:
Q  200 cttcaggatataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    |||| ||||||| |||||||||||| || |||| |||||||| ||||| ||||||||    
T  21931217 cttctggatatactccaaaatacaagaagcatggcttgagatagtaaggcaaatcat 21931161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 22614949 - 22614997
Alignment:
Q  208 tataatccaaaatacaacaaacatgacttgagattgtaagacaaatcat 256  Q
    ||||||||||||||||||||||||||  | |||| ||||| ||||||||    
T  22614949 tataatccaaaatacaacaaacatgatctaagatagtaaggcaaatcat 22614997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 2304971 - 2305131
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||| | | |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||| ||||||||| ||||||||     
T  2304971 atcatgaacacaacaacttttagattttccatcaatgctaactgaggatacttgcaccaaacttcgacgaatcaactctgataaatatccttctgcaact 2305070  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattgccgaatca 175  Q
    |||||||| || ||  | || || || ||||| || |||||||| ||||| || |||||||    
T  2305071 tcttccaaagtcttcccactttcctccttcacaaacccttcagctatccactgtcgaatca 2305131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 34990198 - 34990046
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||| | | | |||||||||| |||| |||   |||||||||||||| |||||  ||||| |||||||||||||  ||| ||||     
T  34990198 atcatgaacacaacaacttctagtttttccatcaatgctaactgaggatacttgcaccaaacttctacgaatcaactctgttaaatatctttcttcaact 34990099  T
Q  115 tcttccaatgtttttacgctatcatctttcacgaatccttcagccatccattg 167  Q
    |||||||| || ||  | || || |||||||| || |||||||| ||||||||    
T  34990098 tcttccaaagtcttcccactttcctctttcacaaacccttcagctatccattg 34990046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 34976352 - 34976245
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||||||||||||| | ||||||     
T  34976352 atcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaact 34976253  T
Q  115 tcttccaa 122  Q
    ||||||||    
T  34976252 tcttccaa 34976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 34983463 - 34983356
Alignment:
Q  15 atcatgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaaca 114  Q
    ||||||||||||||||||||| |   |||||||||| |||| |||   |||||||||||||| || ||  ||||| |||||||||||||| | ||||||     
T  34983463 atcatgaacacaacaacttttaggctttccatcaattctaactgaggatacttgcaccaaacttcgacgaatcaactctgttaaatatccttttgcaact 34983364  T
Q  115 tcttccaa 122  Q
    ||||||||    
T  34983363 tcttccaa 34983356  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 40580911 - 40580766
Alignment:
Q  19 tgaacacaacaactttttgctcttccatcaatactaattgaaactacttgcaccaaacctctactgatcaaatctgttaaatatccatctgcaacatctt 118  Q
    |||||| |||||||||| | | |||||||||| ||||||||   ||||||||||||||  | ||  ||||| || ||||||||| | || ||||| ||||    
T  40580911 tgaacaaaacaacttttagtttttccatcaattctaattgaggatacttgcaccaaactacgacgaatcaactcagttaaatatacttcagcaacttctt 40580812  T
Q  119 ccaatgtttttacgctatcatctttcacgaatccttcagccatcca 164  Q
    |||| || ||| | || || || ||||| || |||||||| |||||    
T  40580811 ccaaagtctttccactttcctccttcacaaacccttcagctatcca 40580766  T

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