View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18962_high_1 (Length: 708)
Name: NF18962_high_1
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 270 - 584
Target Start/End: Original strand, 13383297 - 13383611
Alignment:
| Q |
270 |
gatattattaatggggttgcaaggggtacaccaacattgtgtcatttgtccactttacaaagacttaaacgttccaaacaaatattttgaaaaaatccaa |
369 |
Q |
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| T |
13383297 |
gatattattaatggggttgcaaggggtacaccaacattgtgtcatttgtccactttacaaagacttaaacgttccaaacaaatattttgaaaaaatccaa |
13383396 |
T |
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| Q |
370 |
caattccctatcaattttaaaatatatttaaatttaatattctaaaaatatcaagattttggataaatatatcttataatttgaaccattacgtaggaag |
469 |
Q |
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| T |
13383397 |
caattccctatcaattttaaaatatatttaaatttaatattctaaaaatgtcaaggtttcagataaatatatcttataatttgaaccattacgtaggaag |
13383496 |
T |
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| Q |
470 |
tatagttgtcactcatctctaaatagattggtagatggctaattcatttctcattaaacatcgtggttaaatcatttctcttcaattcaatcaatcatag |
569 |
Q |
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| T |
13383497 |
tttagttgtcactcatctctaaatagattggtagatggctaattcatttcacattaaacatcgtggttaaatcatttctcttcaattcaatcaatcatag |
13383596 |
T |
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| Q |
570 |
gctcgttccatttgc |
584 |
Q |
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| T |
13383597 |
gctcattccatttgc |
13383611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 649 - 691
Target Start/End: Original strand, 13383676 - 13383718
Alignment:
| Q |
649 |
tcaccttcaatgcaagagatacattgaatgcagggtaaaatat |
691 |
Q |
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| T |
13383676 |
tcaccttcaatgttagagatacattgaatgcagggtaaaatat |
13383718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 9847452 - 9847418
Alignment:
| Q |
2 |
ccagagttcgccatggcgaacaatatactcgcgag |
36 |
Q |
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| T |
9847452 |
ccagagttcgccatggcgaacaatatactcgcgag |
9847418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 11909241 - 11909273
Alignment:
| Q |
4 |
agagttcgccatggcgaacaatatactcgcgag |
36 |
Q |
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| T |
11909241 |
agagttcgccatggcgaacaatatactcgcgag |
11909273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 35410831 - 35410755
Alignment:
| Q |
138 |
acaatccatatggagaagaactttatacattttactacttgaagataattcagtacattttctaaacggaccatcaa |
214 |
Q |
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| T |
35410831 |
acaatcaatgtggaaaagaactttataaattttactacttgacaacaatttagtacacttgttaaaccgaccatcaa |
35410755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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