View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18962_high_3 (Length: 464)
Name: NF18962_high_3
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 3546839 - 3546398
Alignment:
| Q |
1 |
ggttgagatacaagacagacatgatgctgctaaagagattgagaagagtttgttggaacttcatcaaatatttttggatatggctgtgatggttgaagca |
100 |
Q |
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| T |
3546839 |
ggttgagatacaagacagacatgatgctgctaaagagattgagaagagtttgttggaacttcatcaaatatttttggatatggctgttatggttgaagca |
3546740 |
T |
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| Q |
101 |
caaggtgagaaaatggatgatattgaacatcatgttcttcatgcttctcattatgttaaagatggtacaaagaatcttcacggtgctaaacagtatcaga |
200 |
Q |
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| T |
3546739 |
caaggtgagaaaatggatgatattgaacatcatgttcttcatgcttctcattatgttaaagatggtacaaagaatcttcacggtgctaaacagtatcaaa |
3546640 |
T |
|
| Q |
201 |
aaagtagcaggaagtggatgtgcattgggattatactcttgcttattctggttctcatcattgttattcccattgtcactagtttcagcagttcttgaaa |
300 |
Q |
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| T |
3546639 |
aaagtagcaggaagtggatgtgcattgggattatactcttgcttattctggttctcatcattgttattcccattgtcactagtttcagcagttcttgaaa |
3546540 |
T |
|
| Q |
301 |
tccttcttttatctgtaatatgaagaatacaatatctgatgtattgattcttttactatgttctagtttttgtatctttgttgagttgtgtacgactcat |
400 |
Q |
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| T |
3546539 |
tccttcttttatctgtaatatgaagaatacaatatctgatgtattgattcttttactatgttctagtttttgtatctttgttgagttgtgtacgactcat |
3546440 |
T |
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| Q |
401 |
cgtcgtttgaatttccttatgatatcatatattgtgcttaaa |
442 |
Q |
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| T |
3546439 |
cgtcgtttgaattgccttatgatatcatatattgtgcttaaa |
3546398 |
T |
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