View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18962_high_4 (Length: 451)
Name: NF18962_high_4
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 5395895 - 5396319
Alignment:
| Q |
13 |
aatattaacagtagcttgcgtaagaagcaacaaagccaccgtaacaaacgccatgagaacaaccacaattcgatcatcaacaagccgaccccataaaatc |
112 |
Q |
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| T |
5395895 |
aatattaacagtagcttgcgtaagaagcaacaaagccaccgtaacaaacgccatgagaacaaccacaattcgatcatcaacaagccgaccccataaaatc |
5395994 |
T |
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| Q |
113 |
accggctgatcacggaggaagtagaagaacaaccatgccgccattaggataacgaaaacaatgagtgagtaaggatgccataaaaggctcagaaacaaaa |
212 |
Q |
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| T |
5395995 |
accggctgatcacggaggaagtagaagaacaaccatgccgccattaggataacgaaaacaatgagtgagtaaggatgccataaaaggctcagaaacaaaa |
5396094 |
T |
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| Q |
213 |
tcaaaagcatcaccatagtgtagttcatgcggaagtatgagatgttgacacgaacacgtgaaattgcttccggtacaccagtggggatgccgagtgaccg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396095 |
tcaaaagcatcaccatagtgtagttcatgcggaagtatgagatgttgacacgaacacgtgaaattgcttccggtacaccagtggggatgccgagtgaccg |
5396194 |
T |
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| Q |
313 |
gatatcaaacatggttttccacggtcgacgagttcctaagccggccttgatccgttgtttgccacgtgttatgtattcaagttttggtggtgttggtgag |
412 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396195 |
gatatcgaacatggttttccacggtcgacgagttcctaagccggccttgatccgttgtttgccacgtgttatgtattcaagttttggtggtgttggtgag |
5396294 |
T |
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| Q |
413 |
gttgggattgtgccgtaggttgatg |
437 |
Q |
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| T |
5396295 |
gttgggattgtgccgtaggttgatg |
5396319 |
T |
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